PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676729414

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TCP

Protein Properties

Length: 365aa MW: 40635.3 Da PI: 6.7691

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676729414	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	96.1	6.6e-30	63	181	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................... 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak +++l+ + 676729414 63 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifgnsgigesstsafpgtnlgfle 162 78*************************************************************7777777777766666666666555555555555555 PP TCP 66 ..................s 66 + 676729414 163 swdlggsssrtrsriadaT 181 5555543333332222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	29.789	64	122	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.0E-27	64	134	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MRSRECDEEE IQAKQEGDNN ENHNHQVNLS NMLQQQNQPV SSSRQWTSAF RNPRIVRVSR 60 TFGGKDRHSK VCTVRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVIDW LLEAAKDDVD 120 KLPPLQFPHG FNQMYPNLIF GNSGIGESST SAFPGTNLGF LESWDLGGSS SRTRSRIADA 180 TTTQRESFDL DKGKWIKHDE NSNQQDHGGF DMNHQHFSLT NPYNNNNNNA SSYYNLGHLQ 240 HSLDQSGNNV TVAISNVPNN NSNNLNLPPP SSSAGDGSQL FFGPPPPAMS SLFPTYPSFL 300 GASHQHHHHH LVDGAGNLQL FSSNANAASQ QQMMTGNSSL IRPFHHLMTS NHDTDRHSSD 360 NDSDS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MRSRECDEEE IQAKQEGDNN ENHNHQVNLS NMLQQQNQPV SSSRQWTSAF RNPRIVRVSR  60
TFGGKDRHSK VCTVRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVIDW LLEAAKDDVD  120
KLPPLQFPHG FNQMYPNLIF GNSGIGESST SAFPGTNLGF LESWDLGGSS SRTRSRIADA  180
TTTQRESFDL DKGKWIKHDE NSNQQDHGGF DMNHQHFSLT NPYNNNNNNA SSYYNLGHLQ  240
HSLDQSGNNV TVAISNVPNN NSNNLNLPPP SSSAGDGSQL FFGPPPPAMS SLFPTYPSFL  300
GASHQHHHHH LVDGAGNLQL FSSNANAASQ QQMMTGNSSL IRPFHHLMTS NHDTDRHSSD  360
NDSDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-19	69	123	1	55	Putative transcription factor PCF6
5zkt_B	3e-19	69	123	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00065	PBM	Transfer from AT5G60970	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676729414

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280693.1	0.0	transcription factor TCP5
Swissprot	Q9FME3	0.0	TCP5_ARATH; Transcription factor TCP5
TrEMBL	R0EXI8	0.0	R0EXI8_9BRAS; Uncharacterized protein
STRING	XP_006280693.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	0.0	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]