PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729270
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 391aa    MW: 44500.2 Da    PI: 8.5379
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729270genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.94.3e-26291372185
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                rW+++ev+aLi+ r+++ee+ +    k++ W+++s+km+e+g+ers+k+Ckekwen+nk+yk++ eg+kk+ +e+s+t +yf++l
  676729270 291 RWPQEEVQALIDSRSQVEEKAGIH--KGAIWDDISAKMKEKGYERSAKKCKEKWENMNKYYKRVVEGKKKQ-PEHSKTRSYFEKL 372
                8******************99887..99*****************************************95.9**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0012288348IPR001005SANT/Myb domain
SuperFamilySSF466895.28E-6290374IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-5290346IPR009057Homeodomain-like
PfamPF138371.5E-19290372No hitNo description
CDDcd122031.20E-22290352No hitNo description
PROSITE profilePS500907.387291346IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MELLAGNCRK RASDDFAEDV DPFDGSDWMY SSRSLRTQGN DDALATLADL APPPQKLKPI  60
RCVVKPPSED RHPLDILAGT LDRLPEMGFL GDGCFETPLL GSKIADVEES GQLATSGFAK  120
DKIDMEFQGR ISRQRTSCDG VSLSSSVDSY SDSDSDSSQG VPKAVTGKRK RQTREKLEHF  180
VEKLVGTMMK RQEKMHNQLI KVMERMEHER IRSEEAWRQQ EMERMKQNEE ARKQDMSRSS  240
ALISFIKSVI GEDVEIPNPS YPPQPLQKYP KQCGSAQRKG DIKFVFSSGR RWPQEEVQAL  300
IDSRSQVEEK AGIHKGAIWD DISAKMKEKG YERSAKKCKE KWENMNKYYK RVVEGKKKQP  360
EHSKTRSYFE KLGNLYKNNS GSADRSGEKE E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398465.10.0trihelix transcription factor GTL1
RefseqXP_024010989.10.0trihelix transcription factor GTL1
TrEMBLV4LJC40.0V4LJC4_EUTSA; Uncharacterized protein
STRINGXP_006398465.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-159Trihelix family protein