PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729076
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 779aa    MW: 88233.4 Da    PI: 7.3333
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729076genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1858113156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                r++ +++t++q+ e+e++F+++ +p+ ++r+eL+++lgL+  q+k+WFqN+R++ k
  676729076  58 RKRYHRHTQHQILEMENYFKECAHPDDKQRKELSRRLGLDHLQIKFWFQNKRTQNK 113
                789999***********************************************998 PP
2START154.58.8e-492334541206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S........EEEEEE CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla........kaetle 83 
                ela ea+ e++++a+++ep+W++ +      +++de+++ f+ + +     +++ea++++++v+m + + v  l+d+   W+ ++a          ++l+
  676729076 233 ELAVEAMGEFMALAQVSEPLWKRGVngmtLALKSDEYTRAFPNGLGprpvgFRTEASKETAMVFMHHLDIVHRLMDVD-LWSLMFAgmvaraitHDTVLD 331
                57899********************9988899*********88777********************************.*******77665554445555 PP

                EECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HH CS
      START  84 vissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hw 179
                +++ +  ++ +lm+ e+q+lsplv+ R+ +fvRy++q+ +g w++vd+S+d+  +        +++++pSg+lie++ +g+skvtwvehv+ ++r   h 
  676729076 332 RVDGNlnETFHLMTVEYQVLSPLVStRECYFVRYCKQHDEGLWAVVDISIDHLFPDL----ALKCRRRPSGCLIEQLRDGGSKVTWVEHVEIDDRGRiHD 427
                55555***********************************************98865....69999****************************9877** PP

                HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 180 llrslvksglaegaktwvatlqrqcek 206
                l+++l++sg+a ga++wvatl+rqce+
  676729076 428 LYKHLISSGQALGANRWVATLERQCER 454
                *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-1942109IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1844116IPR009057Homeodomain-like
PROSITE profilePS5007116.06655115IPR001356Homeobox domain
SMARTSM003891.9E-1656119IPR001356Homeobox domain
CDDcd000862.73E-1658116No hitNo description
PfamPF000463.6E-1658113IPR001356Homeobox domain
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PROSITE profilePS5084836.88224457IPR002913START domain
SuperFamilySSF559613.55E-30227455No hitNo description
CDDcd088754.63E-100228453No hitNo description
SMARTSM002347.4E-41233454IPR002913START domain
PfamPF018523.8E-41233454IPR002913START domain
SuperFamilySSF559616.87E-12511674No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MEPVDVNNNN KKRDTDNNEN ENNNMNGGIS LGIEEFDIAN TSENQEDGSN QNPRSGKRKR  60
YHRHTQHQIL EMENYFKECA HPDDKQRKEL SRRLGLDHLQ IKFWFQNKRT QNKNHQERIE  120
NAQLRAENNR LNADNYRFRD ALANALCPKC GGHTAVGEIS FEEHHLRIQN AALTEEIRQL  180
SVMAAKQTGK AVMSYDLMSP PNQVPPMVTN GSIGNLSGVN VRVQDRDKPL VIELAVEAMG  240
EFMALAQVSE PLWKRGVNGM TLALKSDEYT RAFPNGLGPR PVGFRTEASK ETAMVFMHHL  300
DIVHRLMDVD LWSLMFAGMV ARAITHDTVL DRVDGNLNET FHLMTVEYQV LSPLVSTREC  360
YFVRYCKQHD EGLWAVVDIS IDHLFPDLAL KCRRRPSGCL IEQLRDGGSK VTWVEHVEID  420
DRGRIHDLYK HLISSGQALG ANRWVATLER QCERLAIMTS TNIPSTEPGG LLMVTNDAKQ  480
CMLKLAERMS RGFFAGVTAS TAEMWCNLSG YSGDSVRVMS RKNFNDPGRP EGLILSASYS  540
FWVSAPPTTV FDFLRDENNR IHWDVLFVKG NVQTLTQIAN GIDKRNCVTL LRNTNTSQKK  600
MMMVQESSTD RSASFVIYAP IDLASIETIL NGGDSENVPL LPSGFAILPD GTAKREKDGG  660
SLVNVGFQML EKRSNLLPVL VFDLPKGRVF WLYKKTAYWL AKSILHSTLI LDSKESKSLP  720
MYKPITSGHL ETCFGGVQLV QCVVQYEKAD PICRNSDMFL HVQPNLSYQW LFKDDRYKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634261.10.0PREDICTED: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D3BSS60.0A0A0D3BSS6_BRAOL; Uncharacterized protein
STRINGBo4g045920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2