PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729010
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 409aa    MW: 45779 Da    PI: 7.2902
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729010genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.25.6e-31251306156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+r++W++eLH+rF++ ++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  676729010 251 KQRRCWSHELHRRFLNSLKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 306
                79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.428248308IPR017930Myb domain
SuperFamilySSF466899.26E-17249309IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-27249309IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26251306IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MIKSLSNMKN YNEKRERCCE YIEALEEERR KINVFQRELP LCLELVTQAI EAYRKEISGT  60
TTDNLYGQPE CSEQTTGECG AVLDLFRPIK HSSTSIDEEE EEVDEADDND DDVEHESHDT  120
GVGFVDKNMK SEWLKSVQLW NQPEAVLSNK SVRSSSVWLL RLQLNAKNAI VSRLISVLRC  180
SQQDTEAVLE SIKGNDNGAA SHQPPCYEMN NGKNDDRTSL ETTSAGSGRQ KKETEKDSSC  240
GSGGGGRGQR KQRRCWSHEL HRRFLNSLKQ LGGPHVATPK QIRELMKVDG LTNDEVKSHL  300
QKYRLHTRRP SQTIPNNKDS QTQHFVVVGG LWVPQASHST ANAIVPGETT AGIYGPMVSS  360
LPSEWPSHSN FGRAISEKRS RCSNKEVFRC SSPALSSSTR TKTKDAKIS
Functional Description ? help Back to Top
Source Description
UniProtProbable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705360.10.0transcription factor HHO1-like
SwissprotQ9LS001e-172HHO1_ARATH; Transcription factor HHO1
TrEMBLA0A3P5YLK20.0A0A3P5YLK2_BRACM; Uncharacterized protein
STRINGBo7g082060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136001827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.11e-169G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]