PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728962
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 397aa    MW: 45624.9 Da    PI: 6.0418
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728962genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.33.7e-2772156286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W ++e++ Li++rrem++ ++++k++k+lWe++s+kmre+gf rsp +C++kw+n+ k++kk k+++k+  s  s ++++++++e
  676728962  72 WVQDETRILITLRREMDSLFNTSKSNKHLWEQISSKMREKGFDRSPAMCTDKWRNILKEFKKAKHHDKGSGSAGSGKMSHYKEIE 156
                ********************************************************************99899999******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-562133IPR009057Homeodomain-like
PROSITE profilePS500908.65364128IPR017877Myb-like domain
SMARTSM007177.7E-668130IPR001005SANT/Myb domain
PfamPF138372.8E-2070157No hitNo description
CDDcd122032.89E-2872135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MFVSSSSDKP RSPIDYYKDD NNPSPEVNMM IDVTSNGDVQ ASNHQQQQQM VVGESSSEDQ  60
EMKAPKKRAE AWVQDETRIL ITLRREMDSL FNTSKSNKHL WEQISSKMRE KGFDRSPAMC  120
TDKWRNILKE FKKAKHHDKG SGSAGSGKMS HYKEIEDILR ERNKKAASYK SPTTTPSSLP  180
KVDSFMQFTD KGFEDSGISF GPVEANGRPT LNLERQLDHD GHPLAIDSTD AVTANEVPPW  240
NWRETTGNGN DGQPFVGKTI TVKFGDYTRR VGIDGTAEAI KEAIRSAFRL RTRRAFWLED  300
EEQVIRSLDR DMPLGNYTLH VDEGITVRVC HYDESDPLPV HQEEKIFYTE EDYREFLARR  360
GWTCLREFDG FRNIDNMVRN IYNMDDLQPG VLYRGMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A8e-4666154186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00380DAPTransfer from AT3G25990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728962
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395605.10.0trihelix transcription factor GT-4 isoform X4
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLV4MMW60.0V4MMW6_EUTSA; Uncharacterized protein
STRINGXP_006395605.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein