PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728718
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 468aa    MW: 52338.9 Da    PI: 6.8491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728718genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12321367455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  676728718 321 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 367
                799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.0E-4149226IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.7E-17317383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.234317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.93E-14320371No hitNo description
PfamPF000104.2E-10321367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16321383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGQKFWENQE DRAMVESTIG SEACDFFISS ASSNTAFTKL VPPPSDPNLQ QGLRHVVEGS  60
DWDYALFWLA SNVNSSDGCV LIWGDGHCRV KKGNSGDDYS QQQDETKRRV LGKLHLSFVG  120
SDEDHRLVKS GALTDLDMFY LSSLYFSFRC DSTKYGPAGT YVSGKPLWAA DLPSCLSYYR  180
VRSFLARSAG FKTVLSVPVN CGVVELGSLK LIPEDKSVIE MVKSVFGGSD FVHQPKEAPK  240
IFGRQLSLGA SKPRSMSINF SPKTEDDSGF SLESYEVQAI GGSNQVYGYE QGKDEALYLT  300
DEQKPRKRGR KPANGREEAL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLADAI  360
TYITDMQKKI RVYETEKQIM KRRESNQITP AEVDYQQRHD DAVVRVSCPL ETHPVSKVIQ  420
TFRENEVTPH DTNVAVTEEG VVHTFTLRPQ GGSTAEQLKD KLLASLSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-25315383270Transcription factor MYC2
5gnj_B5e-25315383270Transcription factor MYC2
5gnj_E5e-25315383270Transcription factor MYC2
5gnj_F5e-25315383270Transcription factor MYC2
5gnj_G5e-25315383270Transcription factor MYC2
5gnj_I5e-25315383270Transcription factor MYC2
5gnj_M5e-25315383270Transcription factor MYC2
5gnj_N5e-25315383270Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728718
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283680.0AF428368.1 Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds.
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankAY0576260.0AY057626.1 Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds.
GenBankBT0023010.0BT002301.1 Arabidopsis thaliana At4g16430/dl4240w mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004378.10.0transcription factor bHLH3 isoform X1
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLV4MRH90.0V4MRH9_EUTSA; Uncharacterized protein
STRINGXP_006414350.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]