PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728430
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 277aa    MW: 31167 Da    PI: 8.2329
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728430genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-19131185256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++k+q  +Le+ F+++++++ +++  LAkklgLt rqV vWFqNrRa+ k
  676728430 131 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 185
                677889***********************************************98 PP
2HD-ZIP_I/II122.91.6e-39131220191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +eLr +l
    676728430 131 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR-AL 220
                  69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.7E-29196IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.5E-18112185IPR009057Homeodomain-like
SuperFamilySSF466899.19E-19116188IPR009057Homeodomain-like
PROSITE profilePS5007117.103127187IPR001356Homeobox domain
SMARTSM003896.7E-18129191IPR001356Homeobox domain
PfamPF000461.4E-16131185IPR001356Homeobox domain
CDDcd000867.84E-16131188No hitNo description
PRINTSPR000317.2E-6158167IPR000047Helix-turn-helix motif
PROSITE patternPS000270162185IPR017970Homeobox, conserved site
PRINTSPR000317.2E-6167183IPR000047Helix-turn-helix motif
PfamPF021837.8E-8187221IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.8E-23187230IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0048467Biological Processgynoecium development
GO:0080127Biological Processfruit septum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGKEDLGLSL SLGFAKTHHP PQLNLKPTSS PMSNHQMFPW NQTFVSSSDH QNQQFLRKID  60
VNSLPSTVDL EEETGVSSPN STISSTVSGK RRSEREGTSG VAGDDLDITL DRSSSRGTSD  120
EEEEYGGEGC RKKLRLSKDQ SAVLEDTFKE HNTLNPKQKL ALAKKLGLTA RQVEVWFQNR  180
RARTKLKQTE VDCEYLKRCV EKLTEENRRL EKEAAELRAL KLSPRLYGQM SPPTTLLMCP  240
SCERVAEPSN HNQRSVSLNP WLQMAHGSTF DVMHPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179187RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00050PBMTransfer from AT4G17460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595686.10.0PREDICTED: homeobox-leucine zipper protein HAT1
SwissprotP466000.0HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A1J3FTB70.0A0A1J3FTB7_NOCCA; Homeobox-leucine zipper protein HAT1
STRINGBo7g105120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-163Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]