PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728356
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 310aa    MW: 35727.6 Da    PI: 9.2496
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728356genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31155208255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  676728356 155 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 208
                9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.66E-15152209IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-28153209IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-23155209IPR006447Myb domain, plants
PfamPF002499.2E-7156207IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MELFPSRPDL YLKISRRREE QDEEDNKEQE QVERRLVFRS KASDSDRTAS DHFIHTPQFT  60
SNNEHTKLDR NQEQKESLDQ DLRSNLMVRP IRGIPLRQNQ ILDHYYYSPS LPLYFSEVNG  120
QHANPNYSYN LHHRHRRQFQ PQPQRLTTKR GVRAPRMRWT TTLHAHFVHA VQLLGGHERA  180
TPKSVLELMD VQDLTLAHVK SHLQMYRTIK STEKPTTSSG QSDTCGSGSQ VNNERQAKDL  240
QGLWNNSSSE ARFHLKGKAS GLDISSNKNG DQRCPSYERL SSDSSSLTGT RSETETPNLD  300
FTLAIPNLPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-16156210357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16156210357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16156210357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16156210357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728356
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638954.10.0PREDICTED: probable transcription factor KAN3
SwissprotQ941I21e-162KAN3_ARATH; Probable transcription factor KAN3
TrEMBLA0A0D3A3V50.0A0A0D3A3V5_BRAOL; Uncharacterized protein
STRINGBo1g017770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-132G2-like family protein