PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728350
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 745aa    MW: 83352.8 Da    PI: 6.6361
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728350genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.7e-1892145356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +R +++ +q++e+e+ F+ n++p+ +e+ +L+++lgL+  qVk+WFqN+R+ +k
  676728350  92 TRNRHSVHQIQEMEAIFKVNPHPDDKEKNRLSQELGLKPLQVKFWFQNKRTVMK 145
                7999**********************************************9776 PP
2START1541.2e-482544812206
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                la ++ qelvk+ + +ep+W k + s+n+ ++l ++e +k           ++ ea+ra +vv+m++  lv+ +ld   +W+e++     +a+t++ iss
  676728350 254 LAVSCVQELVKMCDTNEPLWNKKR-SDNERVSLNEEEYKKMfqwpsmdndhFRREASRANAVVIMNSIALVKAFLDAE-KWSEMFCsivsRAKTIQIISS 351
                57899*******************.5555555555555554555667888899*************************.******999*9********** PP

                T.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEE......EEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
      START  88 g.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivd......vSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                g     g+l lm aelq+lsplvp R+ +f+Ry +q  ++g+w+ivd      +S++ +++ ++  ++    + pSg++i++++ng+s++twvehv++++
  676728350 352 GvngesGILLLMHAELQVLSPLVPtREAYFLRYVKQnAEGGKWIIVDfpidsfHSLIKPASATTADQYR---RKPSGCIIQDMPNGYSQITWVEHVEVQE 448
                **********************************************85555557888888888545555...5*************************** PP

                SXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 175 rlp.hwllrslvksglaegaktwvatlqrqcek 206
                +++ h+++r  v+sg a+ga +w+a lqrqce+
  676728350 449 KHVsHEMVREYVRSGEAFGAERWLAVLQRQCER 481
                **99***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-1880141IPR009057Homeodomain-like
SuperFamilySSF466892.72E-1780148IPR009057Homeodomain-like
PROSITE profilePS5007116.08287147IPR001356Homeobox domain
SMARTSM003892.8E-1689151IPR001356Homeobox domain
CDDcd000869.99E-1690148No hitNo description
PfamPF000463.1E-1592145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PROSITE profilePS5084844.647244484IPR002913START domain
SuperFamilySSF559611.28E-30246483No hitNo description
CDDcd088753.21E-108248480No hitNo description
SMARTSM002342.0E-35253481IPR002913START domain
PfamPF018527.0E-41254481IPR002913START domain
SuperFamilySSF559612.88E-12501670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MYGHCQVTKS VGINLDDIFG SASSSPTGTN QNPAFTFENP SFSSYIVPKE EEYGMMSMME  60
NGSGGSFGSG DDPVEDSAIE EQLPPAKKLR LTRNRHSVHQ IQEMEAIFKV NPHPDDKEKN  120
RLSQELGLKP LQVKFWFQNK RTVMKTQQDR RENVMLKAEN HSLKTENHKL LSDLLRLRCS  180
SCGGFRNKLY LETSLLRLEN SRLRQELDRL YNIASLMNNS LPPKEVACFF PKTNKNVNND  240
LFIAEEEKAV AMDLAVSCVQ ELVKMCDTNE PLWNKKRSDN ERVSLNEEEY KKMFQWPSMD  300
NDHFRREASR ANAVVIMNSI ALVKAFLDAE KWSEMFCSIV SRAKTIQIIS SGVNGESGIL  360
LLMHAELQVL SPLVPTREAY FLRYVKQNAE GGKWIIVDFP IDSFHSLIKP ASATTADQYR  420
RKPSGCIIQD MPNGYSQITW VEHVEVQEKH VSHEMVREYV RSGEAFGAER WLAVLQRQCE  480
RMASLVATNI TDLGVIPSAE ARRNLMQMSQ RMVRTFCLTI SNSYGQALSE STKDTVRMTT  540
RKICGGVVLC AVSTTFLPYS HHQVFDLLRD VRSRSQMEIL FNGNSFQEVA HIANGSHPGN  600
CISLLLFNGP DTSSHNVEWM LQETCTDSSG SLVVYSTVDA NAVQLAMNGE DPSRIPILPL  660
GFSVVPANQS GSVEGISVNL HSCLLTVAIQ VFDSDVSATL NLSTVAALNS RICSAVNRIS  720
SALGSYTSTH LLPEMPSSIK QEISN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602839.10.0PREDICTED: homeobox-leucine zipper protein HDG4
RefseqXP_013741032.10.0homeobox-leucine zipper protein HDG4-like
SwissprotQ8L7H40.0HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBLA0A078F6410.0A0A078F641_BRANA; BnaC08g10960D protein
STRINGBo8g049710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.10.0homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]