PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728328
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 352aa    MW: 39445.1 Da    PI: 5.467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728328genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l  ++++ G g+W++ ++  g++R++k+c++rw +yl
        676728328 15 KGPWMPEEDDKLTAYINKNGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                     79********************************************97 PP
2Myb_DNA-binding53.65.2e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE+  +v+++++lG++ W++Ia++++ gRt++++k++w++++
        676728328  68 RGEFSDEEEGTIVRLHALLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5461062IPR017930Myb domain
SuperFamilySSF466891.72E-2912109IPR009057Homeodomain-like
SMARTSM007174.9E-111464IPR001005SANT/Myb domain
PfamPF002496.0E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-221669IPR009057Homeodomain-like
CDDcd001674.07E-91762No hitNo description
PROSITE profilePS5129425.90563117IPR017930Myb domain
SMARTSM007172.7E-1567115IPR001005SANT/Myb domain
PfamPF002492.9E-1568112IPR001005SANT/Myb domain
CDDcd001671.33E-1170113No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRSPCCDQD KGVKKGPWMP EEDDKLTAYI NKNGYGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPDIRRGE FSDEEEGTIV RLHALLGNKW SKIASHLPGR TDNEIKNYWN THMRKKMLQM  120
GIDPTTHEPR TNDLSPILDV SQMLAAAISN GQFGNSNLLN NNTALEDLLK LQLIHKMLQI  180
ITPKAIPNIN SFTTNSVNPK PEPVVNSFNA TSENPKPEPA AGQLNATEPQ VFINQSANED  240
FMPSFENIWD GFEDSQLPGL VTVSQENLNF DKLGASTTTE VNYQAGTGMR PGYYGDQVRK  300
IQSTGSVSVS PETSRLNYPG TAQHSSSSDV LEDWEKFLDD ETSDSCWKKF LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-26151174105C-Myb DNA-Binding Domain
1msf_C6e-26151174105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728328
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759890.0AF175989.1 Arabidopsis thaliana putative transcription factor (MYB39) mRNA, complete cds.
GenBankAK1187280.0AK118728.1 Arabidopsis thaliana At4g17780 mRNA for putative MYB transcription factor, complete cds, clone: RAFL21-07-A19.
GenBankAY5502970.0AY550297.1 Arabidopsis thaliana MYB transcription factor (At4g17785) mRNA, complete cds.
GenBankBT0056420.0BT005642.1 Arabidopsis thaliana clone U51012 putative MYB transcription factor (At4g17785) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013654757.10.0transcription factor MYB39-like
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A3P6BN330.0A0A3P6BN33_BRACM; Uncharacterized protein
STRINGBra021033.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39