PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728144
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 278aa    MW: 30549.1 Da    PI: 7.1271
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728144genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-18112166256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tkeq   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  676728144 112 RKKLRLTKEQSALLEESFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 166
                788899***********************************************98 PP
2HD-ZIP_I/II123.88.3e-40112201191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLEesF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ +l
    676728144 112 RKKLRLTKEQSALLEESFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELK-TL 201
                  69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.119108168IPR001356Homeobox domain
SMARTSM003899.6E-16110172IPR001356Homeobox domain
SuperFamilySSF466892.01E-18110176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-17112166IPR009057Homeodomain-like
CDDcd000861.53E-16112169No hitNo description
PfamPF000469.7E-16112166IPR001356Homeobox domain
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
SMARTSM003401.6E-23168211IPR003106Leucine zipper, homeobox-associated
PfamPF021832.5E-9168201IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGFDDSCNTG LVLGLGLSPT PNNYNNAIKR SSGYKLEPSL TLSLSGDPSV TVIAGADQLC  60
RQTSSHSGVS SFSTGRVVKR ERDGDEESPE EEETTERVIS DYHEDEEGVS ARKKLRLTKE  120
QSALLEESFK HHSTLNPKQK QVLARQLNLR PRQVEVWFQN RRARTKLKQT EVDCEFLKKC  180
CETLTDENIR LQKEIQELKT LKLTHQPFYM HMPASTLTMC PSCERIDGSN GGGSGGDGGN  240
GGSLTTTVVV DGGRSKGAFS ISSKPHFFNP FTNSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728144
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2292180.0AK229218.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-50-N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885765.11e-167homeobox-leucine zipper protein HAT9
SwissprotP466031e-152HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A1J3IVG71e-171A0A1J3IVG7_NOCCA; Homeobox-leucine zipper protein HAT9
STRINGfgenesh2_kg.4__202__AT2G22800.11e-166(Arabidopsis lyrata)
STRINGBostr.19427s0048.1.p1e-166(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-146HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]