PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727978
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 361aa    MW: 40983.8 Da    PI: 9.5333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727978genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.8e-16231021297
                HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 s  l +p  f+++   g  ke++  ++l++  sg sWevk+  ++++    lt+GWk+F+++++L++gD+v+F+++g+  f  +v++f
  676727978  23 HS-HLNIPIAFFSKQikGTTKEGNAVVKLRSeASGLSWEVKM--DGRK----LTQGWKKFASSHDLRVGDIVIFRHVGDLLF--HVTAF 102
                44.499******9999988899999******8899*******..9999....***********************9886555..66665 PP
2B350.34.3e-16146241198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ff + +++ +l+++ l lp  f ++hg+  ++  +++l + + +  +v l+y +++gr+++++GW++F+ +n+ +++D ++Fkl++ +++++v+++++
  676727978 146 FFVARVTACNLREDKLFLPIGFSRSHGLMDRR-CEIVLLNDDWKPVTVFLSYHRTQGRVYIRSGWRRFCCENRKRANDLLTFKLVK-TGTKPVLQLCS 241
                677888899999**************877655.49*************************************************98.88889999997 PP
3B342.89.3e-14262360199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                f++ +++ ++lk+   +lp kf+  +g+++++  ++tl d+ g + +  l+ +++ g++ l+k W+eF++ang+k+g +++++l+ ++ +++++++k+++
  676727978 262 FLTLTLTQNSLKKFKSYLPGKFVWLNGIENAR--KITLVDRYGIKRTTSLKPDNNIGKMRLGKEWREFCQANGVKAGMSFTLELIkEEeDTTTPLLKFCS 359
                6677788999999999*******999988555..8********999999988*******************************99544678889999998 PP

                S CS
         B3  99 k 99 
                k
  676727978 360 K 360
                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-213113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-199112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.68911105IPR003340B3 DNA binding domain
CDDcd100172.58E-1412102No hitNo description
SMARTSM010195.0E-2214105IPR003340B3 DNA binding domain
PfamPF023621.7E-102494IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-18142245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-17142242IPR015300DNA-binding pseudobarrel domain
CDDcd100176.82E-18146241No hitNo description
PfamPF023621.1E-14146241IPR003340B3 DNA binding domain
PROSITE profilePS5086310.842146242IPR003340B3 DNA binding domain
SMARTSM010192.6E-24146243IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-15254359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-14259348IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-12261347No hitNo description
PfamPF023627.0E-13262360IPR003340B3 DNA binding domain
PROSITE profilePS5086310.546262360IPR003340B3 DNA binding domain
SMARTSM010191.7E-17262361IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MANASASSRN NPHFLQPLLP GFHSHLNIPI AFFSKQIKGT TKEGNAVVKL RSEASGLSWE  60
VKMDGRKLTQ GWKKFASSHD LRVGDIVIFR HVGDLLFHVT AFGPSCCEIQ YDEEEGDDDA  120
IQISSDSDSD KYQDTREAGS LSDNSFFVAR VTACNLREDK LFLPIGFSRS HGLMDRRCEI  180
VLLNDDWKPV TVFLSYHRTQ GRVYIRSGWR RFCCENRKRA NDLLTFKLVK TGTKPVLQLC  240
SSMYNRDCLR ASSSSSTSQD RFLTLTLTQN SLKKFKSYLP GKFVWLNGIE NARKITLVDR  300
YGIKRTTSLK PDNNIGKMRL GKEWREFCQA NGVKAGMSFT LELIKEEEDT TTPLLKFCSK  360
S
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727978
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146779.10.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A3P5Z1E50.0A0A3P5Z1E5_BRACM; Uncharacterized protein
STRINGBra029892.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-83B3 family protein