PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676727972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | Trihelix | ||||||||
Protein Properties | Length: 261aa MW: 29413.8 Da PI: 5.4845 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.5 | 2e-14 | 28 | 108 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +Liea ++ +l+rg+l++++W+ev++++ + g ++ +qCk++++ l+k+yk +k+ ++ t+ +fd+l+ 676727972 28 WSEDATATLIEAWGDRYVHLNRGNLRQNDWKEVADAVnssHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------TWCFFDRLD 108 *************************************9666667788******************9998875.......699999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-25 | 26 | 109 | No hit | No description |
SMART | SM00595 | 4.0E-4 | 35 | 115 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
METTPETQSK SQSQSGSHRL PAGREDWWSE DATATLIEAW GDRYVHLNRG NLRQNDWKEV 60 ADAVNSSHGN GRPKTDVQCK NRIDTLKKKY KTEKAKPSST WCFFDRLDFL IGPVAKKSAG 120 AGGVKPALMN HSLNPAGSKS SGSSLDDDDD DDDDDVGDWG FVVRKHRRVE DLDPSEGSSC 180 RELARAILKL GEVYERIEGA KQQMMIELEK QRMEAAKELE LQRMNMLMDM QMELEKSKLG 240 KRRAASGYVI HSSCEDEFTE N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676727972 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353551 | 0.0 | AK353551.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-B11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407472.1 | 1e-154 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 1e-33 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | E4MYF4 | 1e-153 | E4MYF4_EUTHA; mRNA, clone: RTFL01-52-B11 | ||||
TrEMBL | V4LEM3 | 1e-153 | V4LEM3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407472.1 | 1e-154 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 1e-137 | sequence-specific DNA binding transcription factors |