PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676727908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB | ||||||||
Protein Properties | Length: 533aa MW: 58860.9 Da PI: 5.9987 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+++vk++G g+W+++ ++ + R++k+c++rw ++l 676727908 43 KGPWTSTEDGILINYVKKHGEGNWNAVQKHTSLARCGKSCRLRWANHL 90 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.4e-16 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE++l+v+ +++ G++ W+ a++++ gRt++++k++w++ 676727908 96 KGAFSQEEEQLIVEMHAKVGNK-WAQMAEHLP-GRTDNEIKNYWNT 139 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF001693 | 8.4E-260 | 1 | 533 | IPR016310 | Transcription factor, GAMYB |
PROSITE profile | PS51294 | 15.412 | 38 | 90 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-23 | 41 | 93 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 42 | 92 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.11E-29 | 42 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.06E-10 | 45 | 90 | No hit | No description |
Pfam | PF13921 | 7.7E-15 | 46 | 106 | No hit | No description |
PROSITE profile | PS51294 | 25.582 | 91 | 145 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 94 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-16 | 95 | 143 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-11 | 98 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MSYTTTTAES DDGLHSSIYN DSPAADKIAY GCRSRGKASF LKKGPWTSTE DGILINYVKK 60 HGEGNWNAVQ KHTSLARCGK SCRLRWANHL RPNLKKGAFS QEEEQLIVEM HAKVGNKWAQ 120 MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIHVED PQWSQEYITS KITGVDRRRH 180 QDFLQLGNSR ADFLFDDLNF ATSFLPGASD VSDMLACNML GTGASSSPYE SYMPPILPSP 240 KQLRESGWFP MCSSNIKQEF QAPEHFQNAG PQKNLRSCSV SPCDVGHPPS ENQHPSDAVI 300 PDSHTFTDGM LPTSKPLFGA VKLELPSFQY SETSSFDQWK TTPSPPHSDL LDSVDTYIQS 360 PPPLEIDESN CFSSCDTGLL DMLLHEAKIK TSAKHSLLLS SPQKSFGSTQ IKSGEFEDYQ 420 KNLDPPEIPI PTQLSADGIS SGKVVKTEEL GQVWEPKRVD ITRPDVLLAS SWLDQQGCFG 480 IVRDSSSMSD ALALLLGGED TGNSYVTVGS SSGQAPRGVG SCAWTNMPPV WSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-32 | 41 | 144 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Together with MYB33, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:20699403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676727908 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by microRNA159 (miR159a and miR159b) in vegetative tissues (PubMed:20699403, PubMed:17916625, PubMed:15226253). Specific expression in floral organs and in the shoot apices is regulated via miR159-mediated degradation (PubMed:15722475). Slightly induced by ethylene and salicylic acid (PubMed:16463103). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17916625, ECO:0000269|PubMed:20699403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519585 | 0.0 | AY519585.1 Arabidopsis thaliana MYB transcription factor (At3g11440) mRNA, complete cds. | |||
GenBank | BT003940 | 0.0 | BT003940.1 Arabidopsis thaliana clone RAFL15-06-P04 (R20731) putative Myb DNA-binding protein (At3g11440) mRNA, complete cds. | |||
GenBank | BT005120 | 0.0 | BT005120.1 Arabidopsis thaliana clone U20731 putative Myb DNA-binding protein (At3g11440) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888244.1 | 0.0 | transcription factor MYB65 isoform X2 | ||||
Swissprot | Q9FR97 | 0.0 | MYB65_ARATH; Transcription factor MYB65 | ||||
TrEMBL | D7LAN1 | 0.0 | D7LAN1_ARALL; Transcription factor | ||||
STRING | fgenesh2_kg.3__1182__AT3G11440.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3802 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 0.0 | myb domain protein 65 |