PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676727814

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 289aa MW: 33664.1 Da PI: 5.6101

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676727814	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.5e-05	166	210	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 n + r+RR+ri ++ +eL +l+P + K ae+ A +Y+k Lq 676727814 166 QNNAARKRRRRITEKTQELGKLIPGgQ------KH-TAEMFHAAAKYVKFLQ 210 57788*******************844......32.3666666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-8	165	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-8	166	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-5	167	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDCLSYFSNS DFIQLQDCFI PDVDMIMPET DTFFFQEQPQ HQLHQPLHQE EVLSQSLFGF 60 NHLDPFFEPF LPSQEIFLPN TEAKFFNESQ DLESFPTPKH QKLINSTFHF NNNHDPLFIS 120 PNPNQLGSFI TEASTFSEFR VPDFSPAFKF GWSDQNDTKK PELPSQNNAA RKRRRRITEK 180 TQELGKLIPG GQKHTAEMFH AAAKYVKFLQ AQIEILRLSQ TKMQTQECPR VGREMQLLLA 240 SQEIQEKLSR EEVCVVPRDM VQVLKAEECI LRNPKISRDI NKLLPTDRD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	174	RKRRR
2	171	176	KRRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676727814

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415438.2	1e-144	transcription factor bHLH52 isoform X1
Swissprot	Q9SA82	1e-126	BH052_ARATH; Transcription factor bHLH52
TrEMBL	A0A178WDY5	1e-131	A0A178WDY5_ARATH; Uncharacterized protein
STRING	XP_010478497.1	1e-136	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	1e-115	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]