PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727498
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 287aa    MW: 32495.3 Da    PI: 5.404
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727498genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.4e-1885138356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  676727498  85 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 138
                456899***********************************************9 PP
2HD-ZIP_I/II131.82.5e-4284175192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++dalk+en+ L++++++L++e++
    676727498  84 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDALKAENDLLQTHNQKLQAEIM 175
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-1974142IPR009057Homeodomain-like
PROSITE profilePS5007117.21680140IPR001356Homeobox domain
SMARTSM003891.8E-1783144IPR001356Homeobox domain
CDDcd000861.70E-1685141No hitNo description
PfamPF000462.9E-1585138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-1987147IPR009057Homeodomain-like
PRINTSPR000311.1E-5111120IPR000047Helix-turn-helix motif
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5120136IPR000047Helix-turn-helix motif
CDDcd146860.00504133174No hitNo description
PfamPF021833.3E-16140181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSCNNGMSFF PSNFMIQTSY EDDHPHQSPA LAPLLPPCSI PQDLHGFASF LGKRSPIEGC  60
CELEVGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN FELGNKLEPE RKMQLARALG  120
LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDALKAEN DLLQTHNQKL QAEIMGLKTR  180
EQTESINLNK ETEGSCSNRS DNSSDNLRLD ISTAPPSIDS TITGGHPPAP QTIGRHFFPP  240
SQATATTMQF FQNSSSGQSM VKEENSISNM FCAMDDHSGF WPWLDQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727498
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533110.0AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177136.10.0Homeobox-leucine zipper protein family
SwissprotQ8LC030.0ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A178WPS40.0A0A178WPS4_ARATH; ATHB13
TrEMBLA0A1J3FD230.0A0A1J3FD23_NOCCA; Homeobox-leucine zipper protein ATHB-13 (Fragment)
TrEMBLA0A1J3J0R40.0A0A1J3J0R4_NOCCA; Homeobox-leucine zipper protein ATHB-13
STRINGAT1G69780.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]