PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727202
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 697aa    MW: 77583 Da    PI: 6.7343
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727202genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-192576556
               SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +++t++q+++Le+ F+++++p++++r +L+k+lgL  rq+k+WFqNrR+++k
  676727202 25 HRHTPHQIQRLESTFNECQHPDEKQRMQLSKELGLAPRQIKFWFQNRRTQKK 76
               689**********************************************988 PP
2START146.82.1e-462144352206
                HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                +a +a++e++++  a++ +W k     + +n + +   f++s +        + ea+r sg+v  ++++lv  l+d+  +++e ++    + +tl+viss
  676727202 214 IAVTAMEEFLRLTHANDSLWIKANgciDALNLESYENMFPRSSSrggknhnLRKEASRSSGIVLSNAMTLVDMLMDSV-KFSELFPsviaSSKTLAVISS 312
                6889***********************99999999999988888889999999*************************.88888888888********** PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hw 179
                g       al+lm  elq+lsplvp R+f ++Ry++q + g+w+iv vS + +q+ ++     R+ ++pSg+lie++s+g+skvtwvehv+ +++ p h+
  676727202 313 GmrgshgDALHLMLEELQVLSPLVPtREFSVLRYCQQIEHGTWAIVNVSYQFPQFMTQ----SRSYRFPSGCLIEDMSDGYSKVTWVEHVEIEEQGPtHE 408
                ********************************************************95....56666********************************* PP

                HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 180 llrslvksglaegaktwvatlqrqcek 206
                +++  v+ gla+ga++w atlqr ce+
  676727202 409 MFKDNVRDGLAFGAQRWIATLQRMCER 435
                *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-21772IPR009057Homeodomain-like
SuperFamilySSF466891.71E-19878IPR009057Homeodomain-like
PROSITE profilePS5007117.7341878IPR001356Homeobox domain
SMARTSM003891.7E-181982IPR001356Homeobox domain
PfamPF000464.1E-172576IPR001356Homeobox domain
CDDcd000863.74E-182579No hitNo description
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
PROSITE profilePS5084845.554204438IPR002913START domain
SuperFamilySSF559612.64E-28206436No hitNo description
CDDcd088759.95E-99208434No hitNo description
SMARTSM002347.9E-33213435IPR002913START domain
PfamPF018525.4E-38214435IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-5270405IPR023393START-like domain
SuperFamilySSF559611.47E-18456687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010091Biological Processtrichome branching
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MEFLGDSQNH DSSETDKKKK KKRFHRHTPH QIQRLESTFN ECQHPDEKQR MQLSKELGLA  60
PRQIKFWFQN RRTQKKAQHE RADNCALKEE NDRIRCENIA IREAIKHAIC PNCGDAPVHE  120
DSYFDEQKLR IENAQLREEL ERVSNVAAKF IGRPLSHLPP LNPVHVSPLE LFHSAPSLDF  180
DLLPGSSSVM AIPTLQSPPN LVLSEIDKSI MTNIAVTAME EFLRLTHAND SLWIKANGCI  240
DALNLESYEN MFPRSSSRGG KNHNLRKEAS RSSGIVLSNA MTLVDMLMDS VKFSELFPSV  300
IASSKTLAVI SSGMRGSHGD ALHLMLEELQ VLSPLVPTRE FSVLRYCQQI EHGTWAIVNV  360
SYQFPQFMTQ SRSYRFPSGC LIEDMSDGYS KVTWVEHVEI EEQGPTHEMF KDNVRDGLAF  420
GAQRWIATLQ RMCERFTALL ESATSSRDLK GVIPSPEGKQ SIMRLAQRMV SNFCLSVGTS  480
NNTRSTVVSG LDEYGIRVTS YKSQHEPNGM VLCAATSFWL PVSPQSVFNF LKDERTRSQW  540
DVLLNGNSVQ EVAHIATGSH RGNCISVLRG FNASSSENNM LILQESCVDS SGSLVVYTPV  600
DLPALNMAMS GQDTSYIPIL PSGFAVSPQG SRNNQTAELK VEGEGGGGGS LITVGFQIMV  660
SSLQSAKLNM ESMETVNNLI STTVHQIKTT LNCPSTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622KKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727202
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416656.20.0homeobox-leucine zipper protein HDG12
SwissprotQ9LMT80.0HDG12_ARATH; Homeobox-leucine zipper protein HDG12
TrEMBLV4KUN50.0V4KUN5_EUTSA; Uncharacterized protein
STRINGXP_006416656.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30042665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]