PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727114
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 727aa    MW: 81190.6 Da    PI: 7.2681
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727114genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-08619667348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W+  E ++lv +v ++G g W+ I +       +Rt+ ++k++w+++l
        676727114 619 AWSLSEVKKLVVGVSKYGVGKWSEIKKLSFssyAHRTPVDLKDKWRNLL 667
                      7**************************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF070113.8E-361595IPR009741Protein of unknown function DUF1313
PROSITE profilePS5129413.932612671IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-13614674IPR009057Homeodomain-like
SMARTSM007172.2E-9616669IPR001005SANT/Myb domain
SuperFamilySSF466893.45E-16618677IPR009057Homeodomain-like
CDDcd116603.30E-20618668No hitNo description
PfamPF139211.4E-7620678No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MEGDVFSGFG DRHNMDGKLL QSFQKSFVDV QDILDQNRLL INEINQNHES KQPDNLGRNV  60
GLIKELNNNI RRVASLYGDL SHSFARSMDA SSEGESSGTL KSDGKANQKR FRSDYGEMFQ  120
DTVAQTRGAP LSSTNQIGNP VVYKLVRVAR DGRLVPATDE EMLEVKELVE NNESDMPTVP  180
DPAQAEYISD EGSPSQFLQL DSLEDLYQSE TAEAYTENLN SRLESKAEFM YGSQMLLTFP  240
NTKYQSSNEL SWNEELVQSE VFLQEPVRFS SNGCSTDQSM DFSITAGSPK APALSTAASK  300
PGFFRDTGKI CSDNLSIKAL QETFRATFGR ETTCKDKHWL KKRIEMGVSN PCIIPTTSLA  360
ANKLIGGGQN DYNDTIVAFS KDTFDEGRAT KCKDAPSSPD CVKEHPNNFG DSPFEAFVDH  420
YSGNEDYEGE YRSAKRVRKP TKRYIEEISK IDEKQQSNEP LVIPSKDERS ISAVSLGGRV  480
VVTRMVSLAG STIQVPYVSH VRRSRPRENI TALGEFHSSL WEVKATPEES NLNPSQSQLK  540
NDVNRVSGVK SVSGPFQKKL TTSHQSYNDH SKPNLCEVDQ DIMEPEHRDS SGDSSDDSSY  600
YCADRPIMQI AIRRKHHRAW SLSEVKKLVV GVSKYGVGKW SEIKKLSFSS YAHRTPVDLK  660
DKWRNLLKAS FARTPLNKLG SLKKHGSMAI PSQVLSQVRE LAKNQSHVSP ASKARNRMVK  720
TSRHGLL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641769.10.0uncharacterized protein LOC106346863
RefseqXP_022542947.10.0uncharacterized protein LOC106346863
RefseqXP_022542948.10.0uncharacterized protein LOC106346863
TrEMBLA0A078IGK90.0A0A078IGK9_BRANA; BnaC05g13570D protein
STRINGBo5g023810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.10.0TRF-like 3