PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676726552 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | TALE | ||||||||
Protein Properties | Length: 145aa MW: 17238.2 Da PI: 6.6916 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.2 | 3.8e-10 | 88 | 122 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+++gL+++q+ +WF N+R ++ 676726552 88 KWPYPTEADKIALAEETGLDQKQINNWFINQRKRH 122 569*****************************985 PP | |||||||
2 | ELK | 36.2 | 1.3e-12 | 42 | 63 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+qLlrK++++++sLk EFs 676726552 42 ELKDQLLRKFGSHISSLKLEFS 63 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 1.1E-6 | 42 | 63 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.109 | 42 | 62 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.3E-9 | 42 | 63 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.876 | 62 | 125 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-20 | 63 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.1E-14 | 64 | 129 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 67 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.35E-12 | 71 | 126 | No hit | No description |
Pfam | PF05920 | 2.1E-18 | 82 | 121 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MVKNKWAHYE KDHDGAVSSD EELREGDDVA TQDSQQRSND RELKDQLLRK FGSHISSLKL 60 EFSKKKKKGK LPREARQALL DWWNVHYKWP YPTEADKIAL AEETGLDQKQ INNWFINQRK 120 RHWKPSENMP FTMMDDSSET LFTEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676726552 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X81353 | 1e-158 | X81353.1 A.thaliana mRNA for ATK1 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018471943.1 | 3e-92 | PREDICTED: homeobox protein knotted-1-like 2 isoform X1 | ||||
Swissprot | P46640 | 2e-79 | KNAT2_ARATH; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A0D3APM9 | 6e-85 | A0A0D3APM9_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g068250.1 | 1e-85 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 2e-73 | KNOTTED-like from Arabidopsis thaliana 2 |