PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676726122

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 411aa MW: 46220.7 Da PI: 7.9544

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676726122	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.7	9.5e-36	43	194	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+Ptd+elv e+L++kv+gk+ + +i+ +i++++P++Lp v+++ + +fF+k +++y+tg+rk+r+ 676726122 43 LPVGVKFDPTDQELV-EHLEAKVKGKEnkksfpsH---PlidefipTIDGEdGICYTHPQKLP-GVTKDGLSKHFFHKPSRAYTTGTRKRRKiiqtdhds 137 799**********.99****966665551...044443333555545******.555666799***************88999999 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v+ +g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l 676726122 138 eltgsSSETRWHKTGKTRPVMI-NGRQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194 9988766889**********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-38	35	213	IPR003441	NAC domain
PROSITE profile	PS51005	31.588	43	213	IPR003441	NAC domain
Pfam	PF02365	7.0E-16	44	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MKNNNCNLID SKLVEHHHLC GSKHCPGCGR MIQAATKPNW FGLPVGVKFD PTDQELVEHL 60 EAKVKGKENK KSFPSHPLID EFIPTIDGED GICYTHPQKL PGVTKDGLSK HFFHKPSRAY 120 TTGTRKRRKI IQTDHDSELT GSSSETRWHK TGKTRPVMIN GRQRGCKKIL VLYTNFGKNR 180 RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV NSISWSDDHN VSSKNLIEIG 240 ARDEICGVAA ALQSLGSGGV VSRVNTNPFT KAFDEGTAET SKGRENRRVS GTCEEVHDGI 300 IRPSSSSPYS YHIIHDHQHR QIGDTRDLHI PATSSYQHES IFNTIASTMP FQQPQLRGPS 360 SGSGLEDLIM GCTSTCTEDE KSDAISQQNA DWLTFPPFWN QTESDGQNRR F

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MKNNNCNLID SKLVEHHHLC GSKHCPGCGR MIQAATKPNW FGLPVGVKFD PTDQELVEHL  60
EAKVKGKENK KSFPSHPLID EFIPTIDGED GICYTHPQKL PGVTKDGLSK HFFHKPSRAY  120
TTGTRKRRKI IQTDHDSELT GSSSETRWHK TGKTRPVMIN GRQRGCKKIL VLYTNFGKNR  180
RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV NSISWSDDHN VSSKNLIEIG  240
ARDEICGVAA ALQSLGSGGV VSRVNTNPFT KAFDEGTAET SKGRENRRVS GTCEEVHDGI  300
IRPSSSSPYS YHIIHDHQHR QIGDTRDLHI PATSSYQHES IFNTIASTMP FQQPQLRGPS  360
SGSGLEDLIM GCTSTCTEDE KSDAISQQNA DWLTFPPFWN QTESDGQNRR F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676726122

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456809.1	0.0	PREDICTED: NAC domain-containing protein 73 isoform X1
Refseq	XP_018456810.1	0.0	PREDICTED: NAC domain-containing protein 73 isoform X1
Swissprot	Q9M0F8	1e-114	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A397XNG6	0.0	A0A397XNG6_BRACM; Uncharacterized protein
STRING	Bo9g126190.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14928	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56620.1	0.0	NAC domain containing protein 99

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]