PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676726042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HB-other | ||||||||
Protein Properties | Length: 209aa MW: 24271.3 Da PI: 4.7521 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 142 | 200 | 1 | 55 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 + kR++++ +q e+L e +++n ++ +++ ++ ++l + + +q++ WF NrR+++ 676726042 142 KAKRWKPNLKQREILVESYNENLILDSQRKNQILAELlvhgEASIDQISRWFTNRRYRD 200 579*****************************99999899988999***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.317 | 139 | 203 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-7 | 141 | 203 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0021 | 141 | 207 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.5E-7 | 142 | 200 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.54E-4 | 142 | 203 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-7 | 142 | 204 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEKQISSWEK DLAVEESQHL LQIVMRDDVQ MMPENEIGES KHNRTGLENL NSNDDETWSE 60 EEINELLIGG YQQLPNPTHP AFDTLLSDAQ RQEIIESNKV HYAPRLLALE VKDVKVIKDL 120 DLEIDTSDTL MSHFRLGTVG EKAKRWKPNL KQREILVESY NENLILDSQR KNQILAELLV 180 HGEASIDQIS RWFTNRRYRD NKKAQPGLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676726042 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |