PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676725994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ARF | ||||||||
Protein Properties | Length: 1089aa MW: 120581 Da PI: 6.6279 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.3e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l+ 676725994 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFV--RDEKSQLM 221 99*****************************954.4444.48************************************************..4567778* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ 676725994 222 LGIRRA 227 ***997 PP | |||||||
2 | Auxin_resp | 118.5 | 5.4e-39 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F++++nPras+seFvv+++k++kal+ +vs+GmRf+m+feted+ rr++Gtv+g+sdldpvrW++S+Wr+L+ 676725994 252 AAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQ 334 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-44 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-42 | 120 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.81E-21 | 125 | 226 | No hit | No description |
SMART | SM01019 | 1.0E-24 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.534 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.6E-34 | 252 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.8E-9 | 959 | 1047 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.156 | 961 | 1054 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.09E-8 | 975 | 1039 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1089 aa Download sequence Send to blast |
MKAPSNGFHP TSAEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ 60 TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS 240 SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF 300 ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP 360 FYICPPPFFR PKYPRQPGMP DDELDIENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM 420 SMQQNNPLSA GAATTQLPSA LSSYNLPNNF APNDPSKLLN FQSPNLSPAN SQFNKPSMVN 480 HISEQMQAQP AMVKSQQQQQ QQLQQQVQMS HQQLQQHHQQ QQGVYNTGSV NNGVGVVSNQ 540 LSCQNQSTGF SQSQLQQQSM LANGAKMTHP NVVSAGNKGS SQMTSFAQEL QFQQQLELHN 600 STQLLRNQQE QSSMHSLQQN LSQNPQQQLQ MQQQSSKTSP SQQVQLQLLQ KLQQQQQQQQ 660 QQQQQLIPPV SSSLQPQLSA LQQTQSHQLQ QLLSSQNQQP LPQGNNSFSA STFMQPPQIQ 720 VSHQQQGHLN NKPLVGAGRS HSGHTDGEAP SCSTSPSANN TGHDNVSPTN FLSRNQQQGQ 780 AVSVSASDSV FERANNPVQE LYTKTESRNN QGMVNLKSAA EQFKFKGAVT DQIDVSTAGT 840 TYCPDVVGPG QQQQTFPLPS FGFDGDCQSH QQRNNLAFAG NFEAATPDAL YSQKDFQNLV 900 PNYGNAPRDI ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GINDSGLMNG GIWPNQTQRM 960 RTYTKVQKRG SVGRSIDVTR YSGYDELRHD LARMFGIEGQ LEDPQTSDWK LVYTDHENDI 1020 LLVGDDPWEE FVNCLQNIKI LSSAEVQQMS LDGDLAAIPT TNQACSETDS GNAWKVHYED 1080 TSAAASFNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-172 | 16 | 355 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676725994 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979484 | 0.0 | JN979484.1 Brassica rapa subsp. pekinensis auxin response factor 19-2 (ARF19-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416527.1 | 0.0 | auxin response factor 19 | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | V4KB06 | 0.0 | V4KB06_EUTSA; Auxin response factor | ||||
STRING | XP_006416527.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |