PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676725904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB | ||||||||
Protein Properties | Length: 270aa MW: 30688 Da PI: 5.6339 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd++l+ +++q+G g+W+ +++ g+ R++k+c++rw++yl 676725904 14 RGGWTEEEDQKLIAYINQYGIGDWRFLPHKAGLQRCGKSCRLRWLNYL 61 789*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++T++E+e +++ lG++ W++Ia+ m+ gR+++++k++w++ 676725904 67 KGKFTPQEEEAIIKFQSILGNR-WAAIAQQMP-GRSDNDIKNHWNSC 111 79********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.761 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.95E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.532 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.22E-10 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MGRATWFEAD GTKRGGWTEE EDQKLIAYIN QYGIGDWRFL PHKAGLQRCG KSCRLRWLNY 60 LRPGVKKGKF TPQEEEAIIK FQSILGNRWA AIAQQMPGRS DNDIKNHWNS CLKKRLERNG 120 IDTMTHQPTI NLAFKTTSFN TDCRNDSSSS TVSPSSLSSP SGSASLLNKI ATGISSRQHG 180 ADSIKNILSD LRFTSISDQE TEFEESKREH GKNLACDDQE DDFLMWDEES VRRFMEEIGE 240 MDFETNGVYN CSSSSTYGVH EMDLHDDHLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676725904 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149359.1 | 1e-150 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_013641843.1 | 1e-150 | transcription factor MYB41-like | ||||
TrEMBL | A0A078GJM0 | 1e-147 | A0A078GJM0_BRANA; BnaA06g12870D protein | ||||
TrEMBL | A0A3P5YS96 | 1e-147 | A0A3P5YS96_BRACM; Uncharacterized protein | ||||
STRING | Bo5g025790.1 | 1e-147 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 5e-86 | myb domain protein 47 |