PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725902
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 264aa    MW: 30207.8 Da    PI: 4.8263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725902genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd++lv +++++G  +W++ +++ g+ R++k+c++rw++yl
        676725902 14 KGEWTVEEDQKLVAYINEHGICDWRSLPQRAGLQRCGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding56.37.3e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e ++++++ lG++ W++Ia+ m  +Rt++++k++w++ 
        676725902  67 RGKFTPQEEEEIIKLHAVLGNR-WAAIAKQME-NRTDNDIKNHWNSC 111
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.278961IPR017930Myb domain
SuperFamilySSF466892.55E-2911108IPR009057Homeodomain-like
SMARTSM007178.7E-131363IPR001005SANT/Myb domain
PfamPF002498.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-231568IPR009057Homeodomain-like
CDDcd001677.73E-101661No hitNo description
PROSITE profilePS5129426.69662116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002492.3E-1667111IPR001005SANT/Myb domain
CDDcd001673.40E-1069109No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRKTWVDDD GMKKGEWTVE EDQKLVAYIN EHGICDWRSL PQRAGLQRCG KSCRLRWLNY  60
LRPGIRRGKF TPQEEEEIIK LHAVLGNRWA AIAKQMENRT DNDIKNHWNS CLKKRLSRNG  120
IDPMTHEPII NNLTVTTTNE ECGSSSTSTS LTTESPFPSS PSGSASLLNK LAAGISSRQH  180
DLDRIKNILL GPNINSSYQD EEEGLKRDQK IGGGEEDEFL MIWDDEEVRR YMDTDEMDYE  240
TTPYESVLYD SVLNEGIHIL DPIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725902
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747530.0KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584516.11e-154PREDICTED: transcription factor MYB34-like
SwissprotQ9LE636e-59MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0D3CBB11e-153A0A0D3CBB1_BRAOL; Uncharacterized protein
STRINGBo5g025730.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-112myb domain protein 47