PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676725822

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

SRS

Protein Properties

Length: 358aa MW: 39326 Da PI: 6.7409

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676725822	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	225	1.5e-69	115	284	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel......kskkqsals 87 r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+qlaa+ k++++a + ++re+ + sal+ 676725822 115 RQGSMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLAALPVKRNREAssgggddgD-----DDREDeenggkGGDGGSALA 209 7899***************************************************998888777678765431.....22222223444667889999 PP DUF702 88 stklssaeskkeletss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++++a+s+ + + lP+e+ss+avfrc+rvss+dd++ee+aYqtavsigGhvfkGiLydqG+++ 676725822 210 CIRVVNASSSVIFYFLLklgfdsshLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSD 284 9999999998766555456677777*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.7E-64	118	283	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-27	120	162	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.2E-27	234	282	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009299	Biological Process	mRNA transcription
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MSGLFYLGGR DNNKQDHHNH HQDKDHNEDK SNNYLYLYKD EIYNNNKGFE IWPPQYFQQQ 60 QQNHVAPPTN FYSFGMVPSG SSNNNNRSSN RSLYFNVVPD HEPVRSSTGR FTVTRQGSMN 120 CQDCGNQAKK DCPHMRCRTC CKSRGFDCQT HVKSTWVPAA KRRERQAQLA ALPVKRNREA 180 SSGGGDDGDD DREDEENGGK GGDGGSALAC IRVVNASSSV IFYFLLKLGF DSSHLPPEIS 240 SPAVFRCMRV SSIDDEDEEY AYQTAVSIGG HVFKGILYDQ GPSDDHRYSS SPGAAAVETS 300 QHHLNLLAST ASAATTTAVT ASNISNPSID PSSLYTATAA PFNAFITAGT PFFAPPRS

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MSGLFYLGGR DNNKQDHHNH HQDKDHNEDK SNNYLYLYKD EIYNNNKGFE IWPPQYFQQQ  60
QQNHVAPPTN FYSFGMVPSG SSNNNNRSSN RSLYFNVVPD HEPVRSSTGR FTVTRQGSMN  120
CQDCGNQAKK DCPHMRCRTC CKSRGFDCQT HVKSTWVPAA KRRERQAQLA ALPVKRNREA  180
SSGGGDDGDD DREDEENGGK GGDGGSALAC IRVVNASSSV IFYFLLKLGF DSSHLPPEIS  240
SPAVFRCMRV SSIDDEDEEY AYQTAVSIGG HVFKGILYDQ GPSDDHRYSS SPGAAAVETS  300
QHHLNLLAST ASAATTTAVT ASNISNPSID PSSLYTATAA PFNAFITAGT PFFAPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00152	DAP	Transfer from AT1G19790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676725822

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189558	0.0	AC189558.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006P24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013641856.1	0.0	protein SHI RELATED SEQUENCE 7
Refseq	XP_013641857.1	0.0	protein SHI RELATED SEQUENCE 7
Refseq	XP_013641858.1	0.0	protein SHI RELATED SEQUENCE 7
Swissprot	Q9FXH7	0.0	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A078GW49	0.0	A0A078GW49_BRANA; BnaA06g13970D protein
TrEMBL	A0A397Z1S4	0.0	A0A397Z1S4_BRACM; Uncharacterized protein
STRING	Bra025768.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	1e-154	SHI-related sequence 7

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]