PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676724872
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 430aa    MW: 48162.2 Da    PI: 4.9172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676724872genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-182269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed+ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
        676724872 22 KGPWTSAEDQLLIAYVDKHGDGNWNSVQKHSGLSRCGKSCRLRWVNHL 69
                     79*******************************************996 PP
2Myb_DNA-binding45.61.7e-1475118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+ E+++ +++++ +G++ W++ a++++ gRt++++k++w++
        676724872  75 KGAFTEKEEQRVIELHASMGNK-WARMAAELP-GRTDNEIKNFWNT 118
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2411769IPR017930Myb domain
SuperFamilySSF466895.87E-2919116IPR009057Homeodomain-like
SMARTSM007176.9E-152171IPR001005SANT/Myb domain
PfamPF002493.8E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-242376IPR009057Homeodomain-like
CDDcd001677.99E-122469No hitNo description
PROSITE profilePS5129424.52970124IPR017930Myb domain
SMARTSM007171.7E-1474122IPR001005SANT/Myb domain
PfamPF002491.2E-1375118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2477122IPR009057Homeodomain-like
CDDcd001673.04E-1077120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MRKVRHDSGS GDDFAIEKNF HKGPWTSAED QLLIAYVDKH GDGNWNSVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGAFTE KEEQRVIELH ASMGNKWARM AAELPGRTDN EIKNFWNTRL  120
KRLQRLGLPI YPDEVREQAM NAAAQNGQNS DSLDGHHSHE SLEPDCLEIP EVDFKYLQLN  180
NCSSYFQSML STVPTGNLMR QRPCFIQPNM YNLVGCSPYM TPNRKRFREP ETAFPYTGSY  240
VTNEQSSQLW NYPFVESTPD QFNVVPDSML GNATYSSSPS GPLIHGAEKL ELPSFQCFDT  300
QGEPGDWETQ HSIPMPAVES DNTLVQSPQT DQTPSDCPSS FCDGLLESVV YGSSGEKQAA  360
NTDPDSPLLQ SSLLGHVELT PATTNTTGHN SNSETDLVQF GLTSSNERRT SLDGGDWIRQ  420
LLGEDRDYTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30221227106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676724872
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408602.20.0transcription factor MYB104
TrEMBLA0A078HJC00.0A0A078HJC0_BRANA; BnaC03g26620D protein
TrEMBLA0A0D3B7F20.0A0A0D3B7F2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AYS00.0A0A3P6AYS0_BRAOL; Uncharacterized protein
STRINGBo3g041750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-175myb domain protein 81