PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676724704 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | G2-like | ||||||||
Protein Properties | Length: 258aa MW: 29594.7 Da PI: 7.3775 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 39.7 | 1.1e-12 | 23 | 47 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt eLHerFv+av++LGG++ 676724704 23 KPRLRWTAELHERFVDAVTHLGGPD 47 79*********************98 PP | |||||||
2 | G2-like | 50.4 | 4.9e-16 | 71 | 101 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPkti+++m vkgLtl+h+kSHLQk+Rl 676724704 71 TEATPKTIMRVMAVKGLTLYHLKSHLQKFRL 101 57****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-28 | 20 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.18E-12 | 22 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-8 | 23 | 48 | IPR006447 | Myb domain, plants |
TIGRFAMs | TIGR01557 | 1.2E-9 | 72 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 3.1E-14 | 147 | 186 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MMQSREERRA ESPSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDIIS ICSVRLMSAI 60 NLTYNCDILS TEATPKTIMR VMAVKGLTLY HLKSHLQKFR LGKQPHKEHN HGHSVNIRDT 120 NRASMLDLQR NVVFTTPHII GHNMNEMQME VKRRIEEEVE VERQVNQRIE AQGKYMESML 180 EKACETQEAS LTKDYSTLFF DRTTICNNTS PLPIPWFEDH FPSSSSMDST LHLSDINPNF 240 SLQDSRSSIT KNRTVCLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-14 | 23 | 103 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-14 | 23 | 103 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-14 | 23 | 103 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-14 | 23 | 103 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-14 | 23 | 103 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-14 | 23 | 103 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-14 | 23 | 103 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-14 | 23 | 103 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00351 | DAP | Transfer from AT3G12730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676724704 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY070764 | 0.0 | AY070764.1 Arabidopsis thaliana AT3g12730/MBK21_9 mRNA, complete cds. | |||
GenBank | AY143916 | 0.0 | AY143916.1 Arabidopsis thaliana At3g12730/MBK21_9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009124669.1 | 1e-155 | PREDICTED: myb family transcription factor PHL12-like | ||||
Refseq | XP_022544538.1 | 1e-155 | myb family transcription factor PHL12-like isoform X2 | ||||
Swissprot | Q8VYI2 | 1e-146 | PHLC_ARATH; Myb family transcription factor PHL12 | ||||
TrEMBL | A0A078I2Q1 | 1e-153 | A0A078I2Q1_BRANA; BnaA01g30340D protein | ||||
TrEMBL | A0A398ASV3 | 1e-153 | A0A398ASV3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FE19 | 1e-153 | M4FE19_BRARP; Uncharacterized protein | ||||
STRING | Bra039340.1-P | 1e-154 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13745 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12730.1 | 1e-124 | G2-like family protein |
Publications ? help Back to Top | |||
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