PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676724592 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C3H | ||||||||
Protein Properties | Length: 250aa MW: 25904.9 Da PI: 10.0146 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.7e-07 | 38 | 61 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H 676724592 38 KSKPCTKFFSTSGCPFGENCHFLH 61 7789******************** PP | |||||||
2 | zf-CCCH | 35.8 | 1.3e-11 | 216 | 241 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C +f++ G C +GdrC+FaHg+ 676724592 216 FKTKICERFSK-GSCTFGDRCHFAHGE 241 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.21 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-8 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-5 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.78E-15 | 103 | 184 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.8E-11 | 113 | 183 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 4.3E-16 | 113 | 182 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.55 | 114 | 178 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.47E-13 | 116 | 178 | No hit | No description |
Pfam | PF00013 | 4.9E-12 | 116 | 180 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-16 | 210 | 245 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-7 | 215 | 241 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 215 | 245 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.624 | 215 | 242 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-9 | 216 | 241 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDARKRGRPE AGSYNSNGGG FKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL 60 HYVPGGYNAV SQLTNMGPPL PQVSRSMQGS GGGGGRFSGR GESGPGHVSS FGASATAKIS 120 VDASLAGAII GKGGVSSKQI CRQTGAKLSI QDHERDPNLK NIELEGTFEQ INEASAMVRE 180 LIGRLNSASR KPPGGGGGGL GGGLGSEGKP HPGSNFKTKI CERFSKGSCT FGDRCHFAHG 240 EAELRRSGIA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676724592 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353531 | 0.0 | AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407365.1 | 1e-160 | zinc finger CCCH domain-containing protein 36 | ||||
Swissprot | Q9C7C3 | 1e-153 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | E4MYD4 | 1e-159 | E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10 | ||||
TrEMBL | V4M8U6 | 1e-159 | V4M8U6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407365.1 | 1e-160 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-137 | C3H family protein |
Publications ? help Back to Top | |||
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