PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676723852

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

G2-like

Protein Properties

Length: 896aa MW: 99772.5 Da PI: 5.2165

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676723852	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.9	9.5e-33	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av++LGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl 676723852 38 KPRLRWTSELHERFVDAVTELGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-31	35	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.613	35	95	IPR017930	Myb domain
SuperFamily	SSF46689	9.85E-16	37	94	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-23	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	6.3E-7	40	90	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-25	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF04576	1.7E-30	532	621	IPR007656	Zein-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MYSAIRSSLP LDGSMGEYSD GTNNLPIDSC LVLTTDPKPR LRWTSELHER FVDAVTELGG 60 PDKATPKTIM RTMGVKGLTL YHLKSHLQKF RLGRQSCKES TDNSKDVSCV AESQDTGSSS 120 TSSLRLAAQE QNESYQVTEA LRAQMEVQRR LHEQLEVQRR LQLRIESQGK YLQSILEKAC 180 KAIEEQAVAF AGLEAAREEL SELAIKVSNG CQGTTSPFDT TKMTVPSLSE LAVAIEHKNN 240 CSAESSLTSS TVGSPVSAAL LKKRHREVFG NGDSVVVGHE AGLLKSQSVL FSEENDNNKL 300 GVESFENALQ GGKILDVYSD PHKNKGFQES LVNLPVKKIS CVQRCVRKRT PFDSVLYNDA 360 NGGGGGECVG KKRKGERSRD VEFEKDVFSG TPVKEVGNAS CFDLLTSQSL KKGNFKVKSK 420 RFSFCKSPYG LKNRSFGDKS SPQSPASVME YLNDVEENDP LLVNSKVWIH VIDNVETGKA 480 LEDVSFRKSV SLSSIGSEAG GQNKQPERTF SWAGDGTCSS PVDLTRKPIE ILEQVLAEER 540 ASRAALALEL EKERNAAATA ADEALGMILR LQEEKASVEM EARQYQRMIE EKSAFDAEEM 600 SILKEILLRR EREKHFLEKE VDSYRQMFLE TEQPLLNTPD SKPRTEGSQT PQRMTESFDD 660 SSGFDIFTNQ MDNRILDYDN EDSPKPGEVD YDGEMKVNGV DEGQECDQSR SEGLLIDIQQ 720 QEIEEDSSIS EPDSESKKVG EDSHDIDCCV HDIHVVNDED NKVQLNVPSD HVVRRDIKLD 780 RSQSVLDTSY ILPPACPQGQ RNMSTNMRRN SMSAVDYERL KIESEVGLLR GRLRAVQKGR 840 EKLSFSSKEQ SRSQVQRHGD RTSRFWEARR SGPLDSSSPS SKMVKAMSMT LDLHSA

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MYSAIRSSLP LDGSMGEYSD GTNNLPIDSC LVLTTDPKPR LRWTSELHER FVDAVTELGG  60
PDKATPKTIM RTMGVKGLTL YHLKSHLQKF RLGRQSCKES TDNSKDVSCV AESQDTGSSS  120
TSSLRLAAQE QNESYQVTEA LRAQMEVQRR LHEQLEVQRR LQLRIESQGK YLQSILEKAC  180
KAIEEQAVAF AGLEAAREEL SELAIKVSNG CQGTTSPFDT TKMTVPSLSE LAVAIEHKNN  240
CSAESSLTSS TVGSPVSAAL LKKRHREVFG NGDSVVVGHE AGLLKSQSVL FSEENDNNKL  300
GVESFENALQ GGKILDVYSD PHKNKGFQES LVNLPVKKIS CVQRCVRKRT PFDSVLYNDA  360
NGGGGGECVG KKRKGERSRD VEFEKDVFSG TPVKEVGNAS CFDLLTSQSL KKGNFKVKSK  420
RFSFCKSPYG LKNRSFGDKS SPQSPASVME YLNDVEENDP LLVNSKVWIH VIDNVETGKA  480
LEDVSFRKSV SLSSIGSEAG GQNKQPERTF SWAGDGTCSS PVDLTRKPIE ILEQVLAEER  540
ASRAALALEL EKERNAAATA ADEALGMILR LQEEKASVEM EARQYQRMIE EKSAFDAEEM  600
SILKEILLRR EREKHFLEKE VDSYRQMFLE TEQPLLNTPD SKPRTEGSQT PQRMTESFDD  660
SSGFDIFTNQ MDNRILDYDN EDSPKPGEVD YDGEMKVNGV DEGQECDQSR SEGLLIDIQQ  720
QEIEEDSSIS EPDSESKKVG EDSHDIDCCV HDIHVVNDED NKVQLNVPSD HVVRRDIKLD  780
RSQSVLDTSY ILPPACPQGQ RNMSTNMRRN SMSAVDYERL KIESEVGLLR GRLRAVQKGR  840
EKLSFSSKEQ SRSQVQRHGD RTSRFWEARR SGPLDSSSPS SKMVKAMSMT LDLHSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	336	348	KKISCVQRCVRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676723852

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353235	0.0	AK353235.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-H18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013723146.1	0.0	uncharacterized protein LOC106426956
Refseq	XP_022556740.1	0.0	uncharacterized protein LOC106426956
Refseq	XP_022556741.1	0.0	uncharacterized protein LOC106426956
TrEMBL	A0A3N6RK87	0.0	A0A3N6RK87_BRACR; Uncharacterized protein
STRING	Bo4g130850.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-174	G2-like family protein