PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723382
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 281aa    MW: 32325.7 Da    PI: 9.5562
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723382genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-1519106190
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                f+k++  +d +++ +  lp +f+++  ++   s+ +++++++g sWev++  + +++  ++ ++GW++Fv++n L +++ v+F+++g ++ 
  676723382  19 FIKIFQGADLSSETMRALPYDFIRNVPQN-DFSRNMVITTQWGSSWEVEI--SMNPRFyFMEKRGWNHFVSDNALGQNELVTFTHEGLMCL 106
                7888888999999999*******777444.58899***************..999999555669********************8875665 PP
2B335.12.4e-112002751594
                -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                +l +pk+f e+h   +++  + t+ +++g  sWev +  rk+  +  l++GW   v++  L  gD+++Fkl++ +ef lvv
  676723382 200 LLPIPKHFWEKHI--PRG-SEYTIHHSNGnGSWEVLCLLRKR--QASLSSGWGLLVRQYPLSLGDTCTFKLIKPTEFLLVV 275
                578********93..223.367777766669******55555..466************************9988774443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1515115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-1416117IPR015300DNA-binding pseudobarrel domain
CDDcd100178.71E-1418111No hitNo description
PROSITE profilePS5086312.54819114IPR003340B3 DNA binding domain
PfamPF023625.3E-1419106IPR003340B3 DNA binding domain
SMARTSM010191.7E-1619114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.45E-15184278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-13185278IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.404186279IPR003340B3 DNA binding domain
CDDcd100173.36E-8187274No hitNo description
SMARTSM010192.6E-9189279IPR003340B3 DNA binding domain
PfamPF023626.1E-9201275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRNNGFGQS KQDCEELSFI KIFQGADLSS ETMRALPYDF IRNVPQNDFS RNMVITTQWG  60
SSWEVEISMN PRFYFMEKRG WNHFVSDNAL GQNELVTFTH EGLMCLSVNI YEENGKEVFT  120
PWKPRTMASG IKREEGESSN KDVRKDKERG DSMGGVELKV RSNRSKESER SQTNKKIKSK  180
KVEGTVPEFN ITIKKSFRWL LPIPKHFWEK HIPRGSEYTI HHSNGNGSWE VLCLLRKRQA  240
SLSSGWGLLV RQYPLSLGDT CTFKLIKPTE FLLVVSDKAG E
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723382
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022558658.11e-121B3 domain-containing protein At3g17010-like
RefseqXP_022563510.11e-121B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-93Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A397YMA21e-122A0A397YMA2_BRACM; Uncharacterized protein
STRINGBra018430.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.15e-96B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]