PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723376
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 430aa    MW: 48635.5 Da    PI: 6.3656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723376genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11246288754
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  Er+RR+riN+++  Lr+++P       +K++K  +L  Av+YI++L
  676723376 246 HSERKRRERINQRLYALRSVVPRI-----TKMNKNGTLSDAVDYINEL 288
                57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-810143IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.17E-11237293No hitNo description
SuperFamilySSF474592.09E-15238301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13246302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9246288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MMRGGERVKE FLRPFVDSRE WDFCVIWKIG DDPSSGSCID KNIKHEMLEE GIERQKMALC  60
RDEHNEHHIR TLACEALSRF PLFIPLYPGI HGEVVMSKSP KWLVNSGPGS KQDIFSTRVL  120
VPVRDGLVEL FSFIMKPVDE SMVDLIISRC NAFFEPFPEQ AHPFRIIPRA EESMSSGVNL  180
SFEGGGSSSV SNPSSENQTL LGNPNARCRE QAPCLVMTKE EDGLMQNTID VKANQTKENF  240
KSKNLHSERK RRERINQRLY ALRSVVPRIT KMNKNGTLSD AVDYINELLV EKQKLEDEVS  300
GFNEIECKRI AAEEESAIAN TEPEKASSRL NKKVNSEVNL EVHETGERGF LIRVVQEHKR  360
DGFKRLIEAV DSCGLEIIDV NFTRLHLTVM TVLNVKANKD GISAGNLRDL LLKMMITSEN  420
PTGESVKQCT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723376
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293751e-160AK229375.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor bHLH090, complete cds, clone: RAFL16-62-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417445.10.0transcription factor bHLH90
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLV4L7P90.0V4L7P9_EUTSA; Uncharacterized protein
STRINGXP_006417445.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein