PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723014
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 248aa    MW: 28859.6 Da    PI: 9.293
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723014genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-1461105348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +W  +Ed +l ++vk++G++ Wk++a++ g +R +kqc++rw+++l
        676723014  61 KWEDDEDIKLRKLVKLYGTKKWKLVANKHG-TRIGKQCRERWHNHL 105
                      8*****************************.*************97 PP
2Myb_DNA-binding49.59.6e-16111153145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eEd+++++a+k  G++ W+ Ia +++ g++++ +k+rw+
        676723014 111 KKAWSKEEDQIFIEAHKVCGNK-WTEIALKLP-GKSENTIKNRWN 153
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.32754109IPR017930Myb domain
SuperFamilySSF466893.67E-2657152IPR009057Homeodomain-like
SMARTSM007173.0E-1258107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-2361113IPR009057Homeodomain-like
CDDcd001671.45E-1061105No hitNo description
PfamPF139217.2E-1762120No hitNo description
PROSITE profilePS5129418.853110160IPR017930Myb domain
SMARTSM007171.0E-14110158IPR001005SANT/Myb domain
CDDcd001675.28E-10113156No hitNo description
Gene3DG3DSA:1.10.10.601.9E-19114158IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MWDNTIHTKE GNTSGHEPIL DNSVDEPHSF DISLSEGIKG ETTKMNQVAD QKKKQKINSR  60
KWEDDEDIKL RKLVKLYGTK KWKLVANKHG TRIGKQCRER WHNHLRPDIK KKAWSKEEDQ  120
IFIEAHKVCG NKWTEIALKL PGKSENTIKN RWNATLRQMQ SMKKKKSDKN ANISQNDILK  180
NYIREFIIKN GPPKTSGTEE TKSDVDDYDN TSTTSCYVPE SAAISWDDFF TNVCETMDET  240
LKLMHGWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-366215810106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745691.28e-68transcription factor MYB115-like
TrEMBLA0A0D3C0683e-73A0A0D3C068_BRAOL; Uncharacterized protein
STRINGBo4g140150.14e-74(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.14e-59myb domain protein 115