PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676722200
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 176aa    MW: 19987.9 Da    PI: 9.9696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676722200genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001392114123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC+ Cg++F +   L  H+r+H
  676722200  92 HKCSFCGQMFGTGQALGGHMRKH 114
                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-54374No hitNo description
PfamPF139121.4E-104772IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9724875IPR007087Zinc finger, C2H2
SMARTSM003550.434870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576677.59E-690116No hitNo description
PfamPF139121.1E-792116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.74392119IPR007087Zinc finger, C2H2
SMARTSM003550.009892114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKRDRSDYEE FITHRDIVKS LMMLSRSFVV NQIEVKQSTG SRTNDNHFEC KTCNRKFDSF  60
QALGGHRASH KKPKLSIDHE QVKHRNNANA MHKCSFCGQM FGTGQALGGH MRKHKASMIT  120
EQAVVSSAVY TSPVLNRCNS SKRALCLDLN LTPLENDLVY VFGKNLVPQI DLKFVN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676722200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403670.11e-106zinc finger protein ZAT11
SwissprotQ9SLD44e-75ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLV4LZ031e-104V4LZ03_EUTSA; Uncharacterized protein
STRINGXP_006403670.11e-105(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-105C2H2 family protein