PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676722168
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 426aa    MW: 48011.5 Da    PI: 10.5736
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676722168genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.8e-08340389147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E + lv+av++lG+g+W+ + ++     ++Rt  ++k++w ++
        676722168 340 RRPFTVSEVDALVQAVERLGTGRWRDVKSHAFdhaNHRTYVDLKDKWKTL 389
                      679***************************999**9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.916335394IPR017930Myb domain
SMARTSM007174.5E-8339392IPR001005SANT/Myb domain
PfamPF002496.6E-6340389IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-11340390IPR009057Homeodomain-like
CDDcd116602.48E-16341391No hitNo description
SuperFamilySSF466898.58E-16341421IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MESRPRVKLM IGVKEVVDHL TRNERTGPKC SEEGFRVKAK KNVGSDFCIH MIKNKIGRLR  60
LNRSNLFSCV CCKRNMPDCG FDAYQLPGVP RAYRSPRGRR QKSMKKHRSE FEVLAQIAGK  120
FSGDRKTYET KERKDDFVVN NFLKTMEVEA KPQPSPENPS QIALSKDWLA LGPSICSSPI  180
TQAENYNIEG ERKMFSTKER VKFGIKSLKI SELLVDIPKS ATVGSLKVAV LKAVTQILKD  240
GVNIGVLLRG KSIVDDSKTL LQIGIPHDDD DNNNKLGSLG FTLEPRISET TTMLPAVSPK  300
MRRLRVPGSV ESTKTLVAKS AVPVRMKSSS QPEMAHRRIR RPFTVSEVDA LVQAVERLGT  360
GRWRDVKSHA FDHANHRTYV DLKDKWKTLV HTAKISARQR RGEPVPQELL DRVLAAHAFW  420
SDQTCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-473234231100Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676722168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329602e-45AL132960.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20.
GenBankCP0026862e-45CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013768.10.0telomere repeat-binding protein 6
SwissprotQ9M3471e-175TRP6_ARATH; Telomere repeat-binding protein 6
TrEMBLV4NG630.0V4NG63_EUTSA; Uncharacterized protein
STRINGXP_006403653.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15921911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.10.0TRF-like 4