PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676722094

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TCP

Protein Properties

Length: 348aa MW: 38546.1 Da PI: 6.887

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676722094	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.3	2.8e-30	27	130	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............ 88 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++ + ++ ++++ssss+ + + + 676722094 27 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLETSQEPENNTTKPGSSSSEPNLVNTQtqfvatanldse 126 589**************************************************************66666555555555555422222223344444444 PP TCP 89 ...k 89 k 676722094 127 damK 130 4431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-28	28	142	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.429	30	88	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MGLKGYSVGG DGVGEIIEVQ GGHIIRATGR KDRHSKVFTS KGPRDRRVRL SAHTAIQFYD 60 VQDRLGYDRP SKAVDWLIKK AKSAIDKLET SQEPENNTTK PGSSSSEPNL VNTQTQFVAT 120 ANLDSEDAMK TFFPATTTTT SVGGTNMNFQ NYPHHHDDDN IVSRTTTTSN LSQDLGLSLH 180 PFQGNNNNNT VVPETNSFAT AHFETFGRIP GWNHHDLTMT SSSSPSEQQE QQEQERSNGG 240 FMMNHHHHHQ PSMMTLLSSQ QQQLFLGGQQ QQRGTLQSSL FPHSFRSWDQ HQTTSDHHHH 300 NQASPAMFAS SSQFGSHGMM MMQGLSFPIH GDEATQPNSS SSPPNSHL

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MGLKGYSVGG DGVGEIIEVQ GGHIIRATGR KDRHSKVFTS KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKSAIDKLET SQEPENNTTK PGSSSSEPNL VNTQTQFVAT  120
ANLDSEDAMK TFFPATTTTT SVGGTNMNFQ NYPHHHDDDN IVSRTTTTSN LSQDLGLSLH  180
PFQGNNNNNT VVPETNSFAT AHFETFGRIP GWNHHDLTMT SSSSPSEQQE QQEQERSNGG  240
FMMNHHHHHQ PSMMTLLSSQ QQQLFLGGQQ QQRGTLQSSL FPHSFRSWDQ HQTTSDHHHH  300
NQASPAMFAS SSQFGSHGMM MMQGLSFPIH GDEATQPNSS SSPPNSHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-22	35	88	1	54	Putative transcription factor PCF6
5zkt_B	4e-22	35	88	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676722094

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353025	0.0	AK353025.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-K11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434158.1	0.0	PREDICTED: transcription factor TCP10
Swissprot	O82277	1e-147	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A1J3IRA7	0.0	A0A1J3IRA7_NOCCA; Transcription factor TCP10
STRING	Bo4g053680.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14158	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-114	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]