PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721990
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family E2F/DP
Protein Properties Length: 397aa    MW: 44878.2 Da    PI: 8.2206
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721990genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.11.5e-233499171
    E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
               rk+ksL+ll+++fl+l+++   +++ l+++a++L    v  +rRRiYDi+NVLe+++++++++kn+++wkg
  676721990 34 RKQKSLGLLCTNFLALYNRHGIEMIGLDDAATKL---GV--ERRRIYDIVNVLESVGVLTRRAKNQYTWKG 99
               79*****************999************...**..****************************98 PP
2E2F_TDP79.82.5e-25169249171
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                r+eksL+lltq+f+kl+ +se++i++l+e+ak L+ +      +++k+RR+YDi+NVL+++nliek     ++k++++w g
  676721990 169 RREKSLGLLTQNFIKLFVCSEARIISLDEAAKLLLGDahntsIMRTKVRRLYDIANVLSSMNLIEKthtldSRKPAFKWLG 249
                689**************************************999************************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-2730101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.99E-173397IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-283499IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-203599IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-23166250IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-32169249IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-20171249IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.67E-14171250IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSDLPPEKPK MTMALSSSSS MPESSSSLHH SYSRKQKSLG LLCTNFLALY NRHGIEMIGL  60
DDAATKLGVE RRRIYDIVNV LESVGVLTRR AKNQYTWKGF SAIPAALKEL QDEGAKDTFH  120
RFYTNENVKV SDDEDDEEES SQPHSSSQTD SSKAGSLPQS SDSSKIDNRR EKSLGLLTQN  180
FIKLFVCSEA RIISLDEAAK LLLGDAHNTS IMRTKVRRLY DIANVLSSMN LIEKTHTLDS  240
RKPAFKWLGY NGEPTFTLSN DLMQAESKKR VFGTDLTNVS VKRTKTQENA TERRMKMKKH  300
AIAETSYNQS FDAHESRHGP RGYEFGPFAP ATGTYPTPPS EDNSKRAFDV ENLVSDYRPS  360
YQNQVLKDLF AHYMDAWKSW YSEVTQKNPP PDTSQHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-40332413228Transcription factor E2F8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292298RRMKMKK
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721990
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531970.0AK353197.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404291.10.0E2F transcription factor-like E2FE
SwissprotQ8LSZ40.0E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLE4MXF00.0E4MXF0_EUTHA; mRNA, clone: RTFL01-26-N13
TrEMBLV4LPM20.0V4LPM2_EUTSA; Uncharacterized protein
STRINGXP_006404291.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63042743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.20.0DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]