PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721726
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 411aa    MW: 45534.7 Da    PI: 5.0531
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721726genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.93.3e-113474062374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppset.seknsseelaalklfsevsPilkfshltaN 99 
                 +lLl+cAe v++++l++a++lL+++se++sp g++ +R++ayf+eAL+ar+ +   s+ +++l+ ++  + ++s++ +aal++f+ vsP++kfsh+taN
  676721726  47 LSLLLQCAEYVATDHLREASTLLSEISEICSPFGSSPERVVAYFAEALQARVISsFLSGACSQLSETPHvTVSQSQKIFAALQTFNSVSPLIKFSHFTAN 146
                689*************************************************9956778888885555404455888889999***************** PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                qaI +a++ge+ vHiiD+d++qGlQWp L++ LasRp++  s+R+Tg+gs    s++ l +tg+rLa+fA++l +pfef+++  k  + +++++L ++pg
  676721726 147 QAIFQALDGEDSVHIIDLDVMQGLQWPGLFNILASRPRKLRSIRLTGFGS----SSDLLASTGRRLADFAASLSLPFEFHPIQGKIGNVIDPSQLGTRPG 242
                **************************************************....9**************************888888889********** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                Ea++V+++   hrl+d ++s  +     L+++++l+P++v++veqe+++  +++ Fl rf+eal+yysalfd+l  ++++es er +vE+ +l+ ei+n+
  676721726 243 EAVVVHWMQ--HRLYDVTGSDID----ALEVIRRLKPNLVTMVEQELSYddGGSCFLGRFVEALHYYSALFDALGDGMGEESGERFTVEQIVLATEIRNI 336
                ********9..****99999999....*******************998657789********************************************* PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                v  + ++       +++W+e l+++GF+pv+l+ + a+qa lll++ +++gy++ ee+g+l lgWkd +L+++SaW+
  676721726 337 VGGKRRM-------MMRWKEELSRVGFRPVSLRGNPAMQAGLLLSMLPWNGYTLVEENGTLRLGWKDLSLLTASAWQ 406
                *987776.......899***********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.02220386IPR005202Transcription factor GRAS
PfamPF035141.1E-11047406IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MTTKRVDREY PSSGDLSTVK RHKDLDFPED TTLHKDDDDE GCAINLLSLL LQCAEYVATD  60
HLREASTLLS EISEICSPFG SSPERVVAYF AEALQARVIS SFLSGACSQL SETPHVTVSQ  120
SQKIFAALQT FNSVSPLIKF SHFTANQAIF QALDGEDSVH IIDLDVMQGL QWPGLFNILA  180
SRPRKLRSIR LTGFGSSSDL LASTGRRLAD FAASLSLPFE FHPIQGKIGN VIDPSQLGTR  240
PGEAVVVHWM QHRLYDVTGS DIDALEVIRR LKPNLVTMVE QELSYDDGGS CFLGRFVEAL  300
HYYSALFDAL GDGMGEESGE RFTVEQIVLA TEIRNIVGGK RRMMMRWKEE LSRVGFRPVS  360
LRGNPAMQAG LLLSMLPWNG YTLVEENGTL RLGWKDLSLL TASAWQSQPS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-138284052377Protein SCARECROW
5b3h_D1e-138284052377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533820.0AK353382.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632002.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0D3C0M60.0A0A0D3C0M6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C1060.0A0A3P6C106_BRAOL; Uncharacterized protein
STRINGBo4g143710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]