PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676721704 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | Dof | ||||||||
Protein Properties | Length: 210aa MW: 23457.3 Da PI: 9.562 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 112.5 | 1.9e-35 | 25 | 79 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + cprC+s++tkfCyynnysl+qPry+Ck+CrryWt+GG+lr +PvGg +rknk+ 676721704 25 KYCPRCNSKHTKFCYYNNYSLTQPRYLCKTCRRYWTHGGSLRSIPVGGVSRKNKT 79 57***************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-21 | 16 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.121 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.6E-31 | 26 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDTAQRPQLT KEMERRKRSE EALSKYCPRC NSKHTKFCYY NNYSLTQPRY LCKTCRRYWT 60 HGGSLRSIPV GGVSRKNKTF IKTSSTNKPF LPSPVTFEAK GDQVLASSQG ISSNSSSSST 120 FTACPNASSS SRLGLRYELI KPAFDFSLDN PLNQEGVSLA ATNTSDRLLL PFEILKPPYS 180 SPSSNSDKEE AADRSAGFWT EMFGGESWQL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676721704 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010533558.1 | 4e-43 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
STRING | XP_010533558.1 | 2e-42 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19643 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 2e-30 | Dof family protein |