PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676721350

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Nin-like

Protein Properties

Length: 343aa MW: 39716.6 Da PI: 9.9716

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676721350	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.6	1.9e-26	213	262	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +sledlskyF pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl 676721350 213 AGLSLEDLSKYFGVPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 262 5699********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.156	197	282	IPR003035	RWP-RK domain
Pfam	PF02042	8.6E-22	215	262	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAHSLTSLAI FQGVNHKETI RSLHVYGSVE IEREFLFERK GRYVEKKAKP LFCSEGLQRP 60 EISLGSVFGT WRCIFVFRCS NHSLPRFPTL LSPSRNPKLE DIPNLANVLK SISELKQTKL 120 LDTFDKEQRS RLRDCSFDQP KLVELVSKED RVRDCEVDQP KPRKFVLKQD LNCLPDSETE 180 SEESEDDQTE HSESDVKTEI LLKKRRTPSE HVAGLSLEDL SKYFGVPIVE ASRNLNVGLT 240 VLKKKCREFG IPRWPHRKIK SLDSLIHDLQ EEAEKQQKKN KAAAMAVAKK QKKLETEMMN 300 LVKRPFMEIQ IETKRFRQDN FKKRHRASRA KKNQDSLVPS SST

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAHSLTSLAI FQGVNHKETI RSLHVYGSVE IEREFLFERK GRYVEKKAKP LFCSEGLQRP  60
EISLGSVFGT WRCIFVFRCS NHSLPRFPTL LSPSRNPKLE DIPNLANVLK SISELKQTKL  120
LDTFDKEQRS RLRDCSFDQP KLVELVSKED RVRDCEVDQP KPRKFVLKQD LNCLPDSETE  180
SEESEDDQTE HSESDVKTEI LLKKRRTPSE HVAGLSLEDL SKYFGVPIVE ASRNLNVGLT  240
VLKKKCREFG IPRWPHRKIK SLDSLIHDLQ EEAEKQQKKN KAAAMAVAKK QKKLETEMMN  300
LVKRPFMEIQ IETKRFRQDN FKKRHRASRA KKNQDSLVPS SST

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676721350

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	5e-73	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	5e-73	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	5e-73	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013589101.1	0.0	PREDICTED: protein RKD5
Refseq	XP_013665877.1	0.0	protein RKD5
Swissprot	O81791	1e-168	RKD5_ARATH; Protein RKD5
TrEMBL	A0A0D3A1Q8	0.0	A0A0D3A1Q8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FQR5	0.0	A0A3P6FQR5_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo1g006340.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-137	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]