PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721284
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Nin-like
Protein Properties Length: 1386aa    MW: 152825 Da    PI: 7.4493
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721284genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.21.6e-28651701252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  676721284 651 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 701
                799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.041640721IPR003035RWP-RK domain
PfamPF020421.7E-24654701IPR003035RWP-RK domain
SuperFamilySSF542772.75E-23870961No hitNo description
Gene3DG3DSA:3.10.20.2404.6E-23873958No hitNo description
PROSITE profilePS5174528.757875959IPR000270PB1 domain
SMARTSM006662.9E-27875959IPR000270PB1 domain
CDDcd064071.59E-40877958No hitNo description
PfamPF005645.4E-18877958IPR000270PB1 domain
TIGRFAMsTIGR001751.8E-15610551385IPR004434Isocitrate dehydrogenase NAD-dependent
SMARTSM013291.7E-14710581381IPR024084Isopropylmalate dehydrogenase-like domain
Gene3DG3DSA:3.40.718.101.4E-12710581386IPR024084Isopropylmalate dehydrogenase-like domain
SuperFamilySSF536591.15E-10910581385No hitNo description
PfamPF001801.7E-8010591381IPR024084Isopropylmalate dehydrogenase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006099Biological Processtricarboxylic acid cycle
GO:0004449Molecular Functionisocitrate dehydrogenase (NAD+) activity
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1386 aa     Download sequence    Send to blast
MEGGGGGGDG GFLPNSSFGA FSETPMDMDF MEELFFDGCW LETTDGKSLK QTTGQPTPNS  60
TNMNENNNNN SFLYGYQFAE NTSQDHISNQ ETGRKFPPIT PGVLKIEDLT NQPMNQVPFD  120
QSAAMSSAQA EKFLLEETER GRRWWIAPRT SQGPSSSVKD RLVQAINGLN EAVQDKDFLI  180
QIWVPIQQEG KNFLTTLEQP HFFNPKYSSL KRYRDVSVAY NFLADEDSKE SVGLPGRVFL  240
GKLPEWTPDV RFFRSEEYPR IKEAQRCDVR GSLALPVFER GSGTCLGVVE IVTTTQKMNY  300
RPELENICKA LEAVNLRSSA NLKSPSREFL QVYNQFYYAA LPEVSNFLTS VCRSYDLPLA  360
LTWAPCARQG KGGSRHSDEN FSECVSTVDS ACFVLDEQSH NFQEACSEHH LLQGEGIVGK  420
AFKAIKLFFV PEVTTFSKTN YPLAHHAKIS GLHAALAVPL KNKFNGSVEF VLEFFFPKAC  480
LDTEAQQEML KSLSVTLQQD FRSLNLVIDK ELELEVVFPV REELLFSENP LIDTETGENL  540
KPLPLEEISQ EDSSWISHMI KANEKGKGVS LSWEYQKEEP KEEFMLTSGW ENNQIGRGHS  600
SFLSDPEQFH KASNSGLRLD IDPSYDSASF GVGQPLLGSR RPGEKRRTKT EKTIGLEVLR  660
QYFAGSLKDA AKSIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL VIDSVQGVQG  720
SIQLDSFYTS FPELSSPNIS GTGTGTSVKN NDQSRHLNAQ TENGVSAQGI AAAPRSPPSS  780
SCSHSSGSST CCSTGANQST NTANTSTTVT TLMAENAGAI LKRARSEVRL RSVNQEETKS  840
LSRTLSHKTF SEPPLFENLP RLPESRSRSL KAGGASKVKA TFGEAKVRFT LLPTWGFREL  900
QHEIARRFNI DNNIASFDLK YLDDDKEWVL LTCEADLEEC IDIYRSSQSR TIKISVHEAS  960
QAKLGGSFGS TGPGPGPSGQ LCKYALRPPP SPKGQKKAHH HCHHHLLLHF QIRSGRGKRM  1020
SRRSLTLLKN LARNANGSGI QTRSVTYMPR PGDGAPRAVT LIPGDGIGPL VTNAVEQVME  1080
AMHAPIYFEK YDVQGEMSRV PPEVMESIRK NKVCLKGGLK TPVGGGVSSL NVQLRKELDL  1140
FASLVNCFNL PGLPTRHENV DIVVIRENTE GEYAGLEHEV VPGVVESLKV ITKFCSERIA  1200
KYAFEYAYLN NRKKVTAVHK ANIMKLADGL FLESCREVAK KYPGITYNEI IVDNCCMQLV  1260
AKPEQFDVMV TPNLYGNLVA NTAAGIAGGT GVMPGGNVGA DHAVFEQGAS AGNVGKDSIV  1320
LQNKANPVAL LLSSAMMLRH LQFPSFADRL ESAVKRVISE GKCRTKDLGG QSTTQEVVDA  1380
VIANLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gre_B2e-96104613855344Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial
5grh_B2e-96104613855344Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial
5gri_B2e-96104613855344Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial
5grl_B2e-96104613855344Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial
5yvt_B2e-96104613855344Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721284
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283600.0AF428360.1 Arabidopsis thaliana AT4g35260/F23E12_180 mRNA, complete cds.
GenBankAY0492600.0AY049260.1 Arabidopsis thaliana AT4g35260/F23E12_180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412126.10.0protein NLP2
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLV4MB360.0V4MB36_EUTSA; Uncharacterized protein
STRINGXP_006412126.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein