PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721228
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 206aa    MW: 22631.9 Da    PI: 7.4721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721228genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-182978255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  676721228 29 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 78
               69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.1E-392992IPR001471AP2/ERF domain
PROSITE profilePS5103222.8132986IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-213087IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-303087IPR001471AP2/ERF domain
CDDcd000187.27E-273088No hitNo description
PfamPF008474.5E-123078IPR001471AP2/ERF domain
PRINTSPR003675.9E-93041IPR001471AP2/ERF domain
PRINTSPR003675.9E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
METATEVAAA VPTSTVAAAA AVTRKREKPY KGIRMRKWGK WVAEIREPNK RSRIWLGSYS  60
TPEAAARAYD TAVFYLRGPS ARLNFPELLA GVTVAGSGGG GNGGGDMSAA YIRRKAAEVG  120
AQVDALEAAG GNRHHPHHHH HHQQLRGNRD YMDDDHSVNH HNHSDYRLND GHNECSIKEE  180
GFKRCNGSWE AVDLNKLPDP ETSDDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152886463ATERF1
3gcc_A2e-152886463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00020PBMTransfer from AT4G36900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721228
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457134.11e-120PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9SW632e-91RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLM4DMS61e-117M4DMS6_BRARP; Uncharacterized protein
STRINGBra017811.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.15e-77related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]