PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676721204

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HSF

Protein Properties

Length: 80aa MW: 9106.29 Da PI: 4.8899

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676721204	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	71.4	1.7e-22	15	68	2	55
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHH CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvR 55 Fl+k+y++++d+++++++sw+e+g++fvv+++ efak++Lp+yFkh+nf+SF+R 676721204 15 FLSKTYQLVDDQSTDDVVSWNEDGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIR 68 9****************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.7E-24	7	68	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.7E-17	11	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.18E-19	12	69	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.7E-13	15	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.3E-19	15	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-13	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MTAVMVAQRS VPAPFLSKTY QLVDDQSTDD VVSWNEDGTA FVVWKTAEFA KDLLPQYFKH 60 NNFSSFIRFP ENCPGQMGVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hks_A	2e-15	10	68	3	60	HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A	2e-15	10	68	3	60	HEAT-SHOCK TRANSCRIPTION FACTOR
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676721204

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:9645433}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232512	4e-82	AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_195416.1	2e-39	heat shock factor 4
Refseq	XP_013722981.1	9e-40	heat stress transcription factor B-1-like
Refseq	XP_018472168.1	2e-39	PREDICTED: heat stress transcription factor B-1
Refseq	XP_020874746.1	3e-39	heat stress transcription factor B-1
Swissprot	Q96320	2e-40	HSFB1_ARATH; Heat stress transcription factor B-1
TrEMBL	A0A1J3JZ93	5e-38	A0A1J3JZ93_NOCCA; Heat stress transcription factor B-1
TrEMBL	A8IXQ2	5e-38	A8IXQ2_BRACM; Heat shock factor 4
TrEMBL	J7FYU6	3e-40	J7FYU6_ARATH; Truncated heat shock factor B1
STRING	AT4G36990.1	8e-39	(Arabidopsis thaliana)
STRING	fgenesh2_kg.7__342__AT4G36988.1	1e-38	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM965	28	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	8e-43	heat shock factor 4

Publications ? help Back to Top
Weng M, et al. Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress in Arabidopsis thaliana. Plant Cell Environ., 2014. 37(9): p. 2128-38 [PMID:24548003] Nagashima Y,Iwata Y,Ashida M,Mishiba K,Koizumi N Exogenous salicylic acid activates two signaling arms of the unfolded protein response in Arabidopsis. Plant Cell Physiol., 2014. 55(10): p. 1772-8 [PMID:25138441] Nie S,Yue H,Xing D A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance. Plant Physiol., 2016. [PMID:26099269] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Röth S,Mirus O,Bublak D,Scharf KD,Schleiff E DNA-binding and repressor function are prerequisites for the turnover of the tomato heat stress transcription factor HsfB1. Plant J., 2017. 89(1): p. 31-44 [PMID:27560701] Xu G, et al. uORF-mediated translation allows engineered plant disease resistance without fitness costs. Nature, 2017. 545(7655): p. 491-494 [PMID:28514448]