PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676721166

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

G2-like

Protein Properties

Length: 357aa MW: 40641 Da PI: 7.378

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676721166	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.4e-31	216	270	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+rW+++LH++Fv+a+++LGGs++AtPk+i+++mkv+gLt+++vkSHLQkYR++ 676721166 216 QRRRWSQDLHRKFVDALHRLGGSQVATPKQIRDMMKVDGLTNDEVKSHLQKYRMH 270 8****************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.38E-17	212	273	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-27	212	273	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.638	212	272	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.4E-24	216	270	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	217	268	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010092	Biological Process	specification of organ identity
GO:0010629	Biological Process	negative regulation of gene expression
GO:0048449	Biological Process	floral organ formation
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MVQTDTDRRM GLNLNLSMYS LAKPLSQFLE EVSRIKDNHS KLSEIDGYVG KLEEERKKID 60 VFKRELPLCM LLLNEAIGAL KEEARKGSSL MASNGKFHVA EGAKLETDNK KNWMSSAQLW 120 ISNPNSQLQS VANEEEEEDQ CVTQSPFQRC KYPSQGGAFM PFNCPPPPPP ARAPAPAPLS 180 LMTQTSDMMM MDCSRIEQNH QFNKPLQSHH IQKKEQRRRW SQDLHRKFVD ALHRLGGSQV 240 ATPKQIRDMM KVDGLTNDEV KSHLQKYRMH IRKHPLHPGK TLSSSDQPVL LDRDTQSLIS 300 LSRSDSPQSP LADRGLFSNN VGHSSEEAED EEEEEKSDGR SWKSELKKKR QALDLEL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MVQTDTDRRM GLNLNLSMYS LAKPLSQFLE EVSRIKDNHS KLSEIDGYVG KLEEERKKID  60
VFKRELPLCM LLLNEAIGAL KEEARKGSSL MASNGKFHVA EGAKLETDNK KNWMSSAQLW  120
ISNPNSQLQS VANEEEEEDQ CVTQSPFQRC KYPSQGGAFM PFNCPPPPPP ARAPAPAPLS  180
LMTQTSDMMM MDCSRIEQNH QFNKPLQSHH IQKKEQRRRW SQDLHRKFVD ALHRLGGSQV  240
ATPKQIRDMM KVDGLTNDEV KSHLQKYRMH IRKHPLHPGK TLSSSDQPVL LDRDTQSLIS  300
LSRSDSPQSP LADRGLFSNN VGHSSEEAED EEEEEKSDGR SWKSELKKKR QALDLEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00475	DAP	Transfer from AT4G37180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676721166

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411945.1	0.0	transcription factor HHO5
Swissprot	F4JRB0	0.0	HHO5_ARATH; Transcription factor HHO5
TrEMBL	V4MKZ9	0.0	V4MKZ9_EUTSA; Uncharacterized protein
STRING	XP_006411945.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]