PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721122
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 208aa    MW: 24095 Da    PI: 5.0708
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721122genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-2048101457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                ++++t+eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  676721122  48 KRKLTDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKN 101
                4589************************************************95 PP
2HD-ZIP_I/II123.97.6e-4047137292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kr+l++eqv++LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ +++rLe+e  +L+e+l 
    676721122  47 RKRKLTDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESELLQLKEQLY 137
                  8***************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.4E-2045106IPR001356Homeobox domain
PROSITE profilePS5007116.60147102IPR001356Homeobox domain
CDDcd000862.59E-1647103No hitNo description
SuperFamilySSF466892.48E-1848112IPR009057Homeodomain-like
PfamPF000461.6E-1748101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-2149109IPR009057Homeodomain-like
PRINTSPR000315.6E-67382IPR000047Helix-turn-helix motif
PROSITE patternPS00027077100IPR017970Homeobox, conserved site
PRINTSPR000315.6E-68298IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAFISQLYPD LYTQMVPQQG EVKPPKRRRK KSKAAVAAGD GSNCLFRKRK LTDEQVNMLE  60
MSFGDEHKLE SERKDKLAAE LGLDPRQVAV WFQNRRARWK NKRLEEEYNK LKNSHDNVVV  120
DKCRLESELL QLKEQLYDAE REIQRLAERV EGGSSNSPNS SSVSVEANET PFFGDYKVGD  180
DGDDYDNLFY PVPENSYMDG AEWMNLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12849RKKSKAAVAAGDGSNCLFRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721122
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895491e-152AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665374.11e-139homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-130ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A398ANQ71e-138A0A398ANQ7_BRACM; Uncharacterized protein
STRINGBo1g005450.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-89homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]