PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721120
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 316aa    MW: 34002.4 Da    PI: 6.0667
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721120genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.21e-24221283163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+++v++L++eN++L++el++l+ e++klkse+
  676721120 221 ERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLTNENQSLRDELQRLSGECEKLKSEN 283
                89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.5E-29194IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1702.2E-20218281No hitNo description
SMARTSM003383.9E-23221285IPR004827Basic-leucine zipper domain
PfamPF001701.1E-22221283IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.656223286IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-12224281No hitNo description
CDDcd147021.44E-23226276No hitNo description
PROSITE patternPS000360228243IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGTSEEKTPF KPSKPASSAQ DIPPTPYPDW SNSMQAYYGG GGTPNPFFPS PVGSPSPHPY  60
MWSAQPHMMP PYGTPVPYPA MYPPGAVYAH PGMPMPPNSG PTNKETVKDQ APGKKSKGNL  120
KRKGEGGEKA PSGSGNDGVS QSDESVTAGS SDENDENANH QEQGSVRKPS FGQMLADASS  180
QSNTTGEIQG SVPMKPVAPG TNLNIGMDLW SSQAGVAVKD ERELKRQKRK QSNRESARRS  240
RLRKQAECEQ LQQRVESLTN ENQSLRDELQ RLSGECEKLK SENNTIQDEL LRVHGPEAVA  300
NLEQNAAGSN DGEGTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237243RRSRLRK
2237244RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX839220.0X83922.1 B.napus mRNA for G-Box binding factor 1A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411967.10.0G-box-binding factor 1
SwissprotP427740.0GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A1J3DZ240.0A0A1J3DZ24_NOCCA; G-box-binding factor 1
STRINGBra011701.1-P0.0(Brassica rapa)
STRINGXP_010437315.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.10.0G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]