PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721096
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 225aa    MW: 24638.5 Da    PI: 7.2883
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721096genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.82e-2082116135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  676721096  82 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 116
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.91676112IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-1876128IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-1379116No hitNo description
Gene3DG3DSA:3.30.50.103.0E-1780116IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.19E-1481113No hitNo description
PfamPF003204.9E-1882116IPR000679Zinc finger, GATA-type
PROSITE patternPS00344082107IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGFSMFFSSE NDAVHHSSAY ASVDCTLSLG TPSTRLCNDD DDRRFSTHTS NNISNALGSW  60
DFLQGGKKGG GGGGNNLLAR RCANCDTTST PLWRNGPRGP KSLCNACGIR FKKEERRASA  120
TGNSTTGGGS TAPGVPASDH HGGANYYYNN NNNNHNNNQY YASSSPWIHH QQQNTQRLPY  180
YSPANNEYSF VDDVRDGNHD VTSDPFLSWR LNVADRTSLV HDFTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472GGKKGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721096
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893731e-97AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480826.11e-125PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM21e-102GAT19_ARATH; GATA transcription factor 19
TrEMBLV4LS541e-120V4LS54_EUTSA; Uncharacterized protein
STRINGXP_006411982.11e-121(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-90GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]