PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721038
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family SRS
Protein Properties Length: 314aa    MW: 33697.6 Da    PI: 6.7804
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721038genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.32e-68882422154
     DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaesk 97 
                rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s  + s      +  +kr+r+   ++   +ss++l+s+++ 
  676721038  88 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGSGSGsgggGSTIPKRHRD---TTLPGTSSSHLPSNSAG 184
                67899***************************************************999887766555555666666666...56677788889999999 PP

     DUF702  98 keletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                 e+  +s+P+e+ss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+
  676721038 185 LEMGEASFPPELSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 242
                ****************************8899************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.8E-6291241IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-2793135IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.1E-27192240IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAGIFSLGGN TNNNEDEGEE NQQQQKTNWV WYRSNTNTNN INPSSSLWQI PPEQQQLMHH  60
HQPHPQQQSL DLYPGHQIDV SDLATSSRSI TISCRDCGNQ AKKDCTHMRC RTCCKSRGFD  120
CSTHVRSTWI PVARRRERQQ QLHMSTSGGS GSGSGGGGST IPKRHRDTTL PGTSSSHLPS  180
NSAGLEMGEA SFPPELSSDA LFRCVKMSGV DDGGDGQYAY QTTVNIGGHL FKGILYDQGP  240
ESSYMSGGSG GSDHQSSSAG GGNPFNTPAM NDGGGGGGSS GMFVDPNSSA YYSSNMTTMF  300
VPPGTQFYQN PPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052640.0GU205264.1 Brassica rapa subsp. pekinensis stylish 2a (STY2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412014.11e-168protein SHI RELATED SEQUENCE 2
SwissprotO655171e-155SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLV4ME111e-167V4ME11_EUTSA; Uncharacterized protein
STRINGXP_006412014.11e-168(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-120Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]