PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676720868

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Dof

Protein Properties

Length: 398aa MW: 44245.6 Da PI: 9.0208

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676720868	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.1e-38	128	187	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s+ntkfCyynny++sqPryfC++C+ryWt+GG++rnvPvG+grrknk + 676720868 128 PDKILPCPRCESANTKFCYYNNYNVSQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGW 187 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-30	125	185	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-32	130	185	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.546	132	186	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	134	170	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MSKSRDTEIK LFGRTITSSL LSVNHYDRSS SLSPVHGVSD HSKDTSSSSS SSCSPSFGPN 60 RVLASNNHDQ DKSRFKGLCI LSDLNDPPRA AASEISSPRS SKTNGDQQSE ITTTSTSEDN 120 KPTTLKKPDK ILPCPRCESA NTKFCYYNNY NVSQPRYFCR NCQRYWTAGG SMRNVPVGSG 180 RRKNKGWASS NHYLQVTSED YENINNNNNN SGTILSFGSS ESSVTETGKH QSGDTKITAD 240 SAYQENKTHQ GFLPPQVMLP NNSSPWPYQW TPTGPDSSFY HIPVYWGCTV PMWPTSETSP 300 CLGKRSRDQT EVETKDTTTT STTTRARLVS ESLRISESTK NSVWPTKPEK KTEGFSLFNG 360 FETKGSYRRN LVPETSINLQ ANPAAMSRSM NFRESMQQ

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MSKSRDTEIK LFGRTITSSL LSVNHYDRSS SLSPVHGVSD HSKDTSSSSS SSCSPSFGPN  60
RVLASNNHDQ DKSRFKGLCI LSDLNDPPRA AASEISSPRS SKTNGDQQSE ITTTSTSEDN  120
KPTTLKKPDK ILPCPRCESA NTKFCYYNNY NVSQPRYFCR NCQRYWTAGG SMRNVPVGSG  180
RRKNKGWASS NHYLQVTSED YENINNNNNN SGTILSFGSS ESSVTETGKH QSGDTKITAD  240
SAYQENKTHQ GFLPPQVMLP NNSSPWPYQW TPTGPDSSFY HIPVYWGCTV PMWPTSETSP  300
CLGKRSRDQT EVETKDTTTT STTTRARLVS ESLRISESTK NSVWPTKPEK KTEGFSLFNG  360
FETKGSYRRN LVPETSINLQ ANPAAMSRSM NFRESMQQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00223	DAP	Transfer from AT1G69570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676720868

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353482	0.0	AK353482.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-45-E10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588706.1	0.0	PREDICTED: cyclic dof factor 5-like
Swissprot	Q9SEZ3	0.0	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	A0A0D3CXN1	0.0	A0A0D3CXN1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6HBJ4	0.0	A0A3P6HBJ4_BRAOL; Uncharacterized protein
STRING	Bo6g095390.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	0.0	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]