PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720864
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 335aa    MW: 37931.6 Da    PI: 6.7265
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720864genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.2e-322478155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYR+
  676720864 24 KPRLKWTCELHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRI 78
               79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2762181IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-282278IPR009057Homeodomain-like
SuperFamilySSF466892.87E-152378IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-222479IPR006447Myb domain, plants
PfamPF002492.9E-62677IPR001005SANT/Myb domain
PfamPF143792.5E-22127173IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MESNTTNGNN QKIKMSLVLS TDAKPRLKWT CELHHRFIEA VNQLGGPNKA TPKGLMKAME  60
IPGLTLYHLK SHLQKYRIGK SLKFDDNKLE ASSGSETQEA DSKNDSRDFR GSVNEENNSP  120
ANDRGLQITE ALQLQMEVQK KLHEQIEVQR HLQVKIEAQG KYLQSVLLKA QQTLAGYTSS  180
NLGMDFARSE LSRLASMVNP SSSFSELTQV EEYEEEEAGD VEQGFLWCKK PENRGIRQPR  240
RSVESSLTSS ESSETKLNNI NDERKSMELP LMEIKSEVMT EKKKRSLNDV VCVEHQPPKK  300
RNFGVDDDDE QHLRLSLNSY KKDMGTCPNI GLGFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-192380158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720864
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295160.0BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731542.10.0myb family transcription factor PHL8 isoform X2
SwissprotF4I2741e-170PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A078GTS70.0A0A078GTS7_BRANA; BnaC02g19330D protein
STRINGBo2g064200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.21e-173G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]