PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676720854

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 412aa MW: 46597.1 Da PI: 7.1839

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676720854	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169	1.5e-52	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 l pGfrFhPtdeelv++yL++kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t++g+Wkatg+d++++s+ +++ 676720854 15 LLPGFRFHPTDEELVSFYLRRKVEHRPLSI-KLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSTRPNRVTNAGFWKATGTDRPIYSSdGSKC 113 579*************************.89***********7777889***********************************966677 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +gl+k+Lvfykgra kg+ktdW+mhe+rl 676720854 114 IGLRKSLVFYKGRAAKGVKTDWMMHEFRL 142 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-59	11	169	IPR003441	NAC domain
PROSITE profile	PS51005	57.532	15	169	IPR003441	NAC domain
Pfam	PF02365	2.3E-25	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MGDNSGEAKK MEDVLLPGFR FHPTDEELVS FYLRRKVEHR PLSIKLITQL DIYKYDPWDL 60 PKFAMTGEKE WYFYCPRDRK YRNSTRPNRV TNAGFWKATG TDRPIYSSDG SKCIGLRKSL 120 VFYKGRAAKG VKTDWMMHEF RLPSASSHTL SDTHLSPNDT WAICRILRKT NTTALKAISH 180 SFVSSLPKEA STDTEPHENP SNTAKIGPET VQKNAASFNF YKKNLNVTKP RSYYDEKEAT 240 KTSTCATTSP FSYLDFASSD SPGPCLDQQY LRSLLLAPQE RQPSQLPKLN NNDISSFLLN 300 LSSSDSSFPG EYTNHISSNI DLTNAILAQE QCPSLVNLPQ EYQEIGFEEN IGCANQDHHQ 360 ALSHAFKFGD SSSTSTIVGD QHQTQKHHML MESYYTSFSP INDDLPTCFS IA

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MGDNSGEAKK MEDVLLPGFR FHPTDEELVS FYLRRKVEHR PLSIKLITQL DIYKYDPWDL  60
PKFAMTGEKE WYFYCPRDRK YRNSTRPNRV TNAGFWKATG TDRPIYSSDG SKCIGLRKSL  120
VFYKGRAAKG VKTDWMMHEF RLPSASSHTL SDTHLSPNDT WAICRILRKT NTTALKAISH  180
SFVSSLPKEA STDTEPHENP SNTAKIGPET VQKNAASFNF YKKNLNVTKP RSYYDEKEAT  240
KTSTCATTSP FSYLDFASSD SPGPCLDQQY LRSLLLAPQE RQPSQLPKLN NNDISSFLLN  300
LSSSDSSFPG EYTNHISSNI DLTNAILAQE QCPSLVNLPQ EYQEIGFEEN IGCANQDHHQ  360
ALSHAFKFGD SSSTSTIVGD QHQTQKHHML MESYYTSFSP INDDLPTCFS IA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	15	173	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	15	173	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	15	173	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	15	173	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	15	173	20	172	NAC domain-containing protein 19
3swm_B	2e-53	15	173	20	172	NAC domain-containing protein 19
3swm_C	2e-53	15	173	20	172	NAC domain-containing protein 19
3swm_D	2e-53	15	173	20	172	NAC domain-containing protein 19
3swp_A	2e-53	15	173	20	172	NAC domain-containing protein 19
3swp_B	2e-53	15	173	20	172	NAC domain-containing protein 19
3swp_C	2e-53	15	173	20	172	NAC domain-containing protein 19
3swp_D	2e-53	15	173	20	172	NAC domain-containing protein 19
4dul_A	1e-53	15	173	17	169	NAC domain-containing protein 19
4dul_B	1e-53	15	173	17	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676720854

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	1e-156	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453435.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-166	FEZ_ARATH; Protein FEZ
TrEMBL	A0A397YX86	0.0	A0A397YX86_BRACM; Uncharacterized protein
STRING	Bra004403.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-159	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]